Photobacterium proteolyticum strain 13-12

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium proteolyticum strain 13-12 is a Gram-negative, rod-shaped bacterium characterized by its motility, which is facilitated by the presence of true flagella. This strain exhibits a facultative aerobic/anaerobic oxygen requirement, allowing it to thrive in varying environments, whether oxygen-rich or oxygen-poor. It is classified as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperatures. The genomic structure of P. proteolyticum strain 13-12 consists of a single replicon, and the organism is non-spore-forming, which suggests a reliance on vegetative growth rather than sporulation for survival and reproduction. The accession number MJIL00000000.1 is associated with its genomic sequence, providing a resource for further research on its genetic characteristics. The ecological significance of Photobacterium proteolyticum strain 13-12 may be linked to its proteolytic capabilities, as indicated by its species name. This trait could play a vital role in nutrient cycling within its habitat, particularly in environments where organic matter decomposition is essential. The ability to adapt to both aerobic and anaerobic conditions enhances its ecological versatility, potentially allowing it to inhabit diverse environments, including marine and sedimentary ecosystems where organic matter is abundant.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium proteolyticum
Strainstrain 13-12

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceYes
Number of membranesNot Available
Image of Photobacterium proteolyticum strain 13-12
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium proteolyticum strain 13-12 scaffold9, whole genome

Gene Summary

Adenine Count

1690312 bp

Thymine Count

1685383 bp

Guanine Count

1555136 bp

Cytosine Count

1553421 bp

Genome Length

6484429 bp

Protein-coding Genes

5458 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pts n-acetylgalactosamine transporter subunit iicBIT28_06905Not AvailablePositive4775127 - 477589427187.7
pts n-acetylgalactosamine transporter subunit iidBIT28_06910Not AvailablePositive4775884 - 477677732167.9
pts mannose transporter subunit iiaBIT28_06915Not AvailablePositive4776832 - 477727215711.7
n-acetylglucosamine-6-phosphate deacetylaseBIT28_06920Not AvailablePositive4777275 - 477843241440.4
5-dehydro-4-deoxy-d-glucuronate isomeraseBIT28_06925Not AvailablePositive4778474 - 477930431157.2
2-deoxy-d-gluconate 3-dehydrogenaseBIT28_06930Not AvailablePositive4779385 - 478014927010.4
glycosyl hydrolase family 88BIT28_06935Not AvailablePositive4780161 - 478124041178.6
endoxylanaseBIT28_06940Not AvailablePositive4781332 - 478205726808.7
hypothetical proteinBIT28_06945Not AvailablePositive4782140 - 478269720944.2
hypothetical proteinBIT28_06950Not AvailableNegative4782820 - 4785831111489.0

Displaying genes 4111 – 4120 of 5622 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.