Photobacterium proteolyticum strain 13-12

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium proteolyticum strain 13-12 is a Gram-negative, rod-shaped bacterium characterized by its motility, which is facilitated by the presence of true flagella. This strain exhibits a facultative aerobic/anaerobic oxygen requirement, allowing it to thrive in varying environments, whether oxygen-rich or oxygen-poor. It is classified as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperatures. The genomic structure of P. proteolyticum strain 13-12 consists of a single replicon, and the organism is non-spore-forming, which suggests a reliance on vegetative growth rather than sporulation for survival and reproduction. The accession number MJIL00000000.1 is associated with its genomic sequence, providing a resource for further research on its genetic characteristics. The ecological significance of Photobacterium proteolyticum strain 13-12 may be linked to its proteolytic capabilities, as indicated by its species name. This trait could play a vital role in nutrient cycling within its habitat, particularly in environments where organic matter decomposition is essential. The ability to adapt to both aerobic and anaerobic conditions enhances its ecological versatility, potentially allowing it to inhabit diverse environments, including marine and sedimentary ecosystems where organic matter is abundant.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium proteolyticum
Strainstrain 13-12

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceYes
Number of membranesNot Available
Image of Photobacterium proteolyticum strain 13-12
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium proteolyticum strain 13-12 scaffold9, whole genome

Gene Summary

Adenine Count

1690312 bp

Thymine Count

1685383 bp

Guanine Count

1555136 bp

Cytosine Count

1553421 bp

Genome Length

6484429 bp

Protein-coding Genes

5458 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiaminase iiBIT28_04255Not AvailableNegative330017 - 33068525268.8
abc transporter atp-binding proteinBIT28_04260Not AvailableNegative330719 - 33166034361.2
abc transporter permeaseBIT28_04265Not AvailableNegative331729 - 33252329170.9
hydrogenase expression proteinBIT28_04270Not AvailableNegative332543 - 33331628513.5
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseBIT28_04275Not AvailableNegative333328 - 33415528669.4
phna domain proteinBIT28_04285Not AvailableNegative334846 - 33541820813.0
hypothetical proteinBIT28_04290Not AvailablePositive335719 - 33621317082.2
hypothetical proteinBIT28_04295Not AvailablePositive336443 - 33772645403.6
cytosine deaminaseBIT28_04300Not AvailableNegative337780 - 33906648276.1
dna-binding response regulatorBIT28_04305Not AvailablePositive339696 - 34036425012.6

Displaying genes 311 – 320 of 5622 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.