Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 is characterized as a rod-shaped bacterium. It possesses a single replicon, which indicates a streamlined genomic organization that may facilitate efficient replication and cellular function. The strain is cataloged under the accession number MIAL00000000.1, which serves as a reference for its genetic and genomic information. The rod shape of Sphingopyxis sp. suggests a potential adaptation to its ecological niche, allowing for movement and interaction in various environments, particularly in aquatic settings where many members of the Sphingopyxis genus are typically found. This morphology may also play a role in biofilm formation or surface attachment, which are common traits among environmental bacteria that contribute to nutrient cycling and ecosystem dynamics. Understanding the specific traits of Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 can provide insights into its ecological role. Given the genus Sphingopyxis is known for its ability to degrade complex organic compounds, this strain may contribute to bioremediation processes or nutrient recycling in its habitat. The single replicon characteristic may suggest an adaptation to stable environments where rapid genomic changes are less critical, potentially allowing for specialization in metabolic pathways that support its ecological functions. Overall, the traits of Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 highlight its role in maintaining ecological balance through its interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24

Gene Summary

Adenine Count

843591 bp

Thymine Count

835115 bp

Guanine Count

1602391 bp

Cytosine Count

1614918 bp

Genome Length

4897659 bp

Protein-coding Genes

4481 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sam-dependent methyltransferaseA2885_16470Not AvailableNegative4643473 - 464435132469.5
threonine synthaseA2885_16475Not AvailableNegative4644356 - 464575349838.3
hypothetical proteinA2885_16480Not AvailableNegative4645781 - 464644023347.5
hypothetical proteinA2885_16485Not AvailableNegative4646433 - 464682513819.8
cytochrome b562A2885_16490Not AvailableNegative4646827 - 464770232407.3
cytochrome c oxidase assembly proteinA2885_16495Not AvailableNegative4647785 - 464835420572.6
protoheme ix farnesyltransferaseA2885_16500Not AvailableNegative4648503 - 464941432662.7
cytochrome c oxidase subunit iA2885_16505Not AvailableNegative4649478 - 465115161357.5
orotate phosphoribosyltransferaseA2885_16515Not AvailablePositive4652508 - 465308920540.9
pyridoxine 5'-phosphate synthaseA2885_16520Not AvailablePositive4653086 - 465383227197.5

Displaying genes 4321 – 4330 of 4571 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.