Stygiobacter sp. RIFOXYB2_FULL_37_11

Kingdom

Pseudomonadati

Phylum

Ignavibacteriota

Class

Ignavibacteria

Order

Ignavibacteriales

Family

Melioribacteraceae

Genus

Stygiobacter

Description

Stygiobacter sp. RIFOXYB2_FULL_37_11 is a bacterium characterized by a single replicon, which simplifies its genomic organization. The accession number for this strain is MHAU00000000.1, indicating that its genomic information is accessible for further study. The classification of Stygiobacter sp. suggests it is part of an ecological niche where it plays a specific role, likely in the breakdown of organic materials or in biogeochemical cycling due to its position within the broader context of microbial diversity. While specific metabolic pathways or ecological interactions are not detailed, the presence of a single replicon may indicate streamlined evolutionary adaptations that confer advantages in its environmental niche. Overall, the genomic simplicity of Stygiobacter sp. RIFOXYB2_FULL_37_11 may reflect a specialization that permits efficient resource utilization in its habitat, contributing to our understanding of microbial ecology and the dynamics of microbial communities. Further research could elucidate its functional capabilities and ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumIgnavibacteriota
ClassIgnavibacteria
OrderIgnavibacteriales
FamilyMelioribacteraceae
GenusStygiobacter
SpeciesStygiobacter sp. RIFOXYB2_FULL_37_11
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Stygiobacter sp. RIFOXYB2_FULL_37_11

Gene Summary

Adenine Count

1354729 bp

Thymine Count

1351719 bp

Guanine Count

817718 bp

Cytosine Count

818209 bp

Genome Length

4346285 bp

Protein-coding Genes

3738 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinA2299_15915Not AvailableNegative321223 - 32252148855.9
2-dehydro-3-deoxygluconokinaseA2299_15920Not AvailableNegative322614 - 32364838056.2
2-deoxy-d-gluconate 3-dehydrogenaseA2299_15925Not AvailableNegative323674 - 32443827682.2
5-dehydro-4-deoxy-d-glucuronate isomeraseA2299_15930Not AvailableNegative324450 - 32528331479.3
transketolaseA2299_15935Not AvailableNegative325317 - 32730272770.8
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive328802 - 329206Not Available
phosphogluconate dehydrogenase (nadp(+)-dependent, decarboxylating)A2299_15940Not AvailableNegative327419 - 32887052909.5
erythronate-4-phosphate dehydrogenaseA2299_15945Not AvailableNegative328885 - 33001541758.8
d-mannonate epimeraseA2299_15950Not AvailableNegative330033 - 33107139037.8
nitrous oxide metabolic proteinA2299_13115Not AvailableNegative331653 - 33244429741.6

Displaying genes 271 – 280 of 3785 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.