Comamonadaceae bacterium SCN 68-20 ABT02_C0108

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Description

Comamonadaceae bacterium SCN 68-20 ABT02_C0108 is a member of the family Comamonadaceae, characterized by a single replicon. This bacterium is cataloged under the accession number MEFU00000000.1, which provides a unique identifier for its genomic data. The classification within the Comamonadaceae family suggests that this bacterium may share certain metabolic and ecological traits with other members of the group, potentially including the ability to degrade various organic compounds. However, the specific metabolic capabilities and ecological roles of Comamonadaceae bacterium SCN 68-20 ABT02_C0108 remain undefined based on the provided information. The presence of a single replicon indicates a streamlined genomic architecture, which could suggest efficient replication processes and possibly a specific adaptation to its environmental niche. The ecological significance of this bacterium may be linked to its interactions within microbial communities, particularly in environments where members of the Comamonadaceae family are prevalent. Overall, while the specific traits and behaviors of Comamonadaceae bacterium SCN 68-20 ABT02_C0108 are not detailed, its classification and genomic structure hint at potential roles in biogeochemical cycles, particularly in the degradation of organic matter, emphasizing the importance of further research into its ecological contributions.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Comamonadaceae bacterium SCN 68-20 ABT02_C0108, whole genome

Gene Summary

Adenine Count

762602 bp

Thymine Count

771451 bp

Guanine Count

1658305 bp

Cytosine Count

1655121 bp

Genome Length

4848040 bp

Protein-coding Genes

4093 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinABT02_16620Not AvailablePositive3734276 - 373645379019.5
dna-binding response regulatorABT02_16625P9WGM4Positive3736548 - 373718922719.6
outer membrane lipoprotein carrier protein lolaABT02_16630Q21TL7Negative3737294 - 373792322506.8
hypothetical proteinABT02_16635Not AvailableNegative3737926 - 373927548974.3
abc transporter substrate-binding proteinABT02_16640Q92KZ7Negative3739272 - 374043842711.0
cell division protein ftskABT02_16645Q8XWX9Negative3740563 - 374290284057.4
thioredoxin-disulfide reductaseABT02_16650Q9KSS4Positive3743027 - 374398334027.5
50s ribosomal protein l28ABT02_16655B9MEB7Positive3744142 - 37443758884.81
50s ribosomal protein l33ABT02_16660B9MEB8Positive3744398 - 37445686411.94
lysr family transcriptional regulatorABT02_16665Not AvailablePositive3744740 - 374567533727.9

Displaying genes 3231 – 3240 of 4142 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

266 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da

Displaying 1–10 of 266 metabolites

Health Effects

No health effects information available for this bacterium.