Thioclava sp. SK-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava sp. SK-1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This organism is part of the diverse microbial community and has been cataloged under the accession number MDHA00000000.1, which provides a reference for genetic and genomic studies. The Gram-negative classification of Thioclava sp. SK-1 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature typical of this group. This structural characteristic may contribute to its adaptability in various environments, as Gram-negative bacteria often exhibit resilience to certain antibiotics and environmental stresses. The rod shape of Thioclava sp. SK-1 suggests a potential efficiency in nutrient absorption and mobility, which can be advantageous for survival in diverse ecological niches. The presence of a single replicon may indicate a streamlined genomic organization, possibly allowing for efficient replication and regulation of essential metabolic functions. In a broader ecological context, the traits of Thioclava sp. SK-1 could play a role in biogeochemical cycles, particularly in environments where microbial interactions are pivotal. Gram-negative bacteria are often involved in processes such as nutrient cycling and the degradation of organic materials. Understanding the specific ecological roles of Thioclava sp. SK-1 could provide insights into its contributions to microbial diversity and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava sp. SK-1
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava sp. SK-1 scaffold9_cov1919_read209, whole genome shotgun

Gene Summary

Adenine Count

922548 bp

Thymine Count

911850 bp

Guanine Count

1215450 bp

Cytosine Count

1239243 bp

Genome Length

4289091 bp

Protein-coding Genes

3822 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gluconate 5-dehydrogenaseBFP70_18920Not AvailablePositive4082544 - 408331126930.5
l-idonate 5-dehydrogenaseBFP70_18925Not AvailablePositive4083311 - 408435436112.7
c4-dicarboxylate abc transporter substrate-binding proteinBFP70_18930Not AvailablePositive4084384 - 408540336406.0
c4-dicarboxylate abc transporter permeaseBFP70_18935Not AvailablePositive4085485 - 408608122190.7
c4-dicarboxylate abc transporter permeaseBFP70_18940Not AvailablePositive4086081 - 408739746253.1
dihydroxy-acid dehydrataseBFP70_18945Not AvailablePositive4087459 - 408925563963.4
lysr family transcriptional regulatorBFP70_18950Not AvailableNegative4089347 - 409023432692.7
class c beta-lactamaseBFP70_18955Not AvailablePositive4090407 - 409155541147.5
hypothetical proteinBFP70_18960Not AvailablePositive4091815 - 409226117103.6
abc transporter substrate-binding proteinBFP70_18965Not AvailableNegative4092492 - 409410558289.1

Displaying genes 3651 – 3660 of 3822 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.