Thioclava sp. SK-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava sp. SK-1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This organism is part of the diverse microbial community and has been cataloged under the accession number MDHA00000000.1, which provides a reference for genetic and genomic studies. The Gram-negative classification of Thioclava sp. SK-1 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature typical of this group. This structural characteristic may contribute to its adaptability in various environments, as Gram-negative bacteria often exhibit resilience to certain antibiotics and environmental stresses. The rod shape of Thioclava sp. SK-1 suggests a potential efficiency in nutrient absorption and mobility, which can be advantageous for survival in diverse ecological niches. The presence of a single replicon may indicate a streamlined genomic organization, possibly allowing for efficient replication and regulation of essential metabolic functions. In a broader ecological context, the traits of Thioclava sp. SK-1 could play a role in biogeochemical cycles, particularly in environments where microbial interactions are pivotal. Gram-negative bacteria are often involved in processes such as nutrient cycling and the degradation of organic materials. Understanding the specific ecological roles of Thioclava sp. SK-1 could provide insights into its contributions to microbial diversity and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava sp. SK-1
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava sp. SK-1 scaffold9_cov1919_read209, whole genome shotgun

Gene Summary

Adenine Count

922548 bp

Thymine Count

911850 bp

Guanine Count

1215450 bp

Cytosine Count

1239243 bp

Genome Length

4289091 bp

Protein-coding Genes

3822 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBFP70_16875Not AvailablePositive3681700 - 368205312517.0
glutathione synthaseBFP70_16880Not AvailablePositive3682137 - 368308435482.5
hypothetical proteinBFP70_16885Not AvailablePositive3683081 - 368401033098.9
aaa family atpaseBFP70_16890Not AvailableNegative3683955 - 368549053646.9
rna polymerase factor sigma-32BFP70_16895Not AvailablePositive3685994 - 368682732043.0
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthaseBFP70_16900Not AvailablePositive3686973 - 368818142323.3
deoxyuridine 5'-triphosphate nucleotidohydrolaseBFP70_16905Not AvailablePositive3688178 - 368864516417.7
molybdopterin biosynthesis proteinBFP70_16910Not AvailablePositive3688646 - 368968036583.0
peptidase m3BFP70_16915Not AvailablePositive3689738 - 369175674594.2
mbl fold hydrolaseBFP70_16920Not AvailableNegative3691864 - 369353760428.9

Displaying genes 3271 – 3280 of 3822 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.