Thioclava sp. SK-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava sp. SK-1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This organism is part of the diverse microbial community and has been cataloged under the accession number MDHA00000000.1, which provides a reference for genetic and genomic studies. The Gram-negative classification of Thioclava sp. SK-1 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature typical of this group. This structural characteristic may contribute to its adaptability in various environments, as Gram-negative bacteria often exhibit resilience to certain antibiotics and environmental stresses. The rod shape of Thioclava sp. SK-1 suggests a potential efficiency in nutrient absorption and mobility, which can be advantageous for survival in diverse ecological niches. The presence of a single replicon may indicate a streamlined genomic organization, possibly allowing for efficient replication and regulation of essential metabolic functions. In a broader ecological context, the traits of Thioclava sp. SK-1 could play a role in biogeochemical cycles, particularly in environments where microbial interactions are pivotal. Gram-negative bacteria are often involved in processes such as nutrient cycling and the degradation of organic materials. Understanding the specific ecological roles of Thioclava sp. SK-1 could provide insights into its contributions to microbial diversity and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava sp. SK-1
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava sp. SK-1 scaffold9_cov1919_read209, whole genome shotgun

Gene Summary

Adenine Count

922548 bp

Thymine Count

911850 bp

Guanine Count

1215450 bp

Cytosine Count

1239243 bp

Genome Length

4289091 bp

Protein-coding Genes

3822 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flagellar basal-body rod protein flgfBFP70_10065Not AvailablePositive2116087 - 211680025197.8
flagellar basal-body rod protein flggBFP70_10070Not AvailablePositive2116811 - 211759627395.2
flagella basal body p-ring formation protein flgaBFP70_10075Not AvailablePositive2117596 - 211802115223.6
flagellar basal body l-ring proteinBFP70_10080Not AvailablePositive2118029 - 211875425929.7
flagellar basal body-associated protein flilBFP70_10085Not AvailablePositive2118764 - 211927018146.6
3'-5' exonucleaseBFP70_10090Not AvailablePositive2119379 - 211999322909.5
hypothetical proteinBFP70_10095Not AvailablePositive2120006 - 212061421465.5
lipopolysaccharide transport periplasmic protein lptaBFP70_10100Not AvailablePositive2120630 - 212110916335.5
lps export abc transporter atp-binding proteinBFP70_10105Not AvailablePositive2121106 - 212187327985.1
ribosomal subunit interface proteinBFP70_10110Not AvailablePositive2122150 - 212273121379.1

Displaying genes 1921 – 1930 of 3822 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.