Thioclava sp. SK-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava sp. SK-1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This organism is part of the diverse microbial community and has been cataloged under the accession number MDHA00000000.1, which provides a reference for genetic and genomic studies. The Gram-negative classification of Thioclava sp. SK-1 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature typical of this group. This structural characteristic may contribute to its adaptability in various environments, as Gram-negative bacteria often exhibit resilience to certain antibiotics and environmental stresses. The rod shape of Thioclava sp. SK-1 suggests a potential efficiency in nutrient absorption and mobility, which can be advantageous for survival in diverse ecological niches. The presence of a single replicon may indicate a streamlined genomic organization, possibly allowing for efficient replication and regulation of essential metabolic functions. In a broader ecological context, the traits of Thioclava sp. SK-1 could play a role in biogeochemical cycles, particularly in environments where microbial interactions are pivotal. Gram-negative bacteria are often involved in processes such as nutrient cycling and the degradation of organic materials. Understanding the specific ecological roles of Thioclava sp. SK-1 could provide insights into its contributions to microbial diversity and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava sp. SK-1
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava sp. SK-1 scaffold9_cov1919_read209, whole genome shotgun

Gene Summary

Adenine Count

922548 bp

Thymine Count

911850 bp

Guanine Count

1215450 bp

Cytosine Count

1239243 bp

Genome Length

4289091 bp

Protein-coding Genes

3822 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sodium:proton antiporterBFP70_07890Not AvailablePositive1642953 - 164402336784.1
hypothetical proteinBFP70_07895Not AvailableNegative1644470 - 16446918166.91
cell division/cell wall cluster transcriptional repressor mrazBFP70_07900Not AvailablePositive1644931 - 164541618307.9
16s rrna (cytosine(1402)-n(4))-methyltransferaseBFP70_07905Not AvailablePositive1645426 - 164645436984.1
hypothetical proteinBFP70_07910Not AvailablePositive1646451 - 164681613644.2
cell division protein ftsiBFP70_07915Not AvailablePositive1646813 - 164860364411.1
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseBFP70_07920Not AvailablePositive1648709 - 165019351791.6
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseBFP70_07925Not AvailablePositive1650193 - 165163250475.0
phospho-n-acetylmuramoyl-pentapeptide- transferaseBFP70_07930Not AvailablePositive1651634 - 165271638480.8
hypothetical proteinBFP70_07935Not AvailablePositive1652852 - 165367628651.9

Displaying genes 1501 – 1510 of 3822 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.