Thioclava sp. SK-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava sp. SK-1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This organism is part of the diverse microbial community and has been cataloged under the accession number MDHA00000000.1, which provides a reference for genetic and genomic studies. The Gram-negative classification of Thioclava sp. SK-1 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature typical of this group. This structural characteristic may contribute to its adaptability in various environments, as Gram-negative bacteria often exhibit resilience to certain antibiotics and environmental stresses. The rod shape of Thioclava sp. SK-1 suggests a potential efficiency in nutrient absorption and mobility, which can be advantageous for survival in diverse ecological niches. The presence of a single replicon may indicate a streamlined genomic organization, possibly allowing for efficient replication and regulation of essential metabolic functions. In a broader ecological context, the traits of Thioclava sp. SK-1 could play a role in biogeochemical cycles, particularly in environments where microbial interactions are pivotal. Gram-negative bacteria are often involved in processes such as nutrient cycling and the degradation of organic materials. Understanding the specific ecological roles of Thioclava sp. SK-1 could provide insights into its contributions to microbial diversity and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava sp. SK-1
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava sp. SK-1 scaffold9_cov1919_read209, whole genome shotgun

Gene Summary

Adenine Count

922548 bp

Thymine Count

911850 bp

Guanine Count

1215450 bp

Cytosine Count

1239243 bp

Genome Length

4289091 bp

Protein-coding Genes

3822 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBFP70_05810Not AvailableNegative1215312 - 121582418288.0
abc transporter substrate-binding proteinBFP70_05815Not AvailableNegative1215821 - 121679833482.7
lysr family transcriptional regulatorBFP70_05820Not AvailableNegative1216878 - 121809244300.4
glcnac-pi de-n-acetylaseBFP70_05825Not AvailablePositive1218261 - 121899227667.7
catechol 2,3-dioxygenaseBFP70_05830Not AvailablePositive1219090 - 122007336964.1
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylaseBFP70_05835Not AvailablePositive1220089 - 122076023435.3
4-oxalomesaconate tautomeraseBFP70_05840Not AvailablePositive1220891 - 122194036443.0
mfs transporterBFP70_05845Not AvailableNegative1221944 - 122316742560.0
quinate dehydrogenaseBFP70_05850Not AvailableNegative1223306 - 122572386356.1
hypothetical proteinBFP70_05855Not AvailableNegative1225947 - 122684032960.6

Displaying genes 1091 – 1100 of 3822 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.