Escherichia coli strain HE-MDREc68

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain HE-MDREc68 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic and exhibits mobility due to the presence of flagella. This strain is primarily associated with various hosts, including humans (Homo sapiens), domestic animals like chickens (Gallus gallus) and cattle (Bos taurus), as well as numerous other vertebrates and invertebrates. It has been identified in a range of environments, primarily in host-associated habitats, indicating its adaptability and potential for transmission across species. The optimal growth temperature for HE-MDREc68 is 37°C, placing it within the mesophilic temperature range. This strain has a single replicon and possesses a double membrane structure, characteristic of Gram-negative bacteria. HE-MDREc68 is known to be pathogenic to humans, being associated with a variety of health issues including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as septicemia and hemolytic uremic syndrome (HUS). Its pathogenic potential is underscored by its ability to cause diseases ranging from mild diarrhea to severe neonatal meningitis and even colorectal cancer. The wide array of hosts and the serious health effects linked to HE-MDREc68 suggest an ecological versatility that enhances its survival and spread. This adaptability may facilitate its role as both a free-living organism and a pathogenic agent, illustrating the complex interactions between microbial life and host organisms in various environments. Understanding such strains is crucial for developing effective public health strategies and interventions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain HE-MDREc68

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain HE-MDREc68
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain HE-MDREc68 scaffold9.1, whole genome

Gene Summary

Adenine Count

1298782 bp

Thymine Count

1296084 bp

Guanine Count

1339906 bp

Cytosine Count

1340345 bp

Genome Length

5275450 bp

Protein-coding Genes

4781 genes

Non-Coding Genes

471 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
two-component system sensor histidine kinase narxBFD68_18620Not AvailablePositive1251297 - 125309367102.0
two-component system response regulator narlBFD68_18625Not AvailablePositive1253086 - 125373623928.3
invasinBFD68_18630Not AvailableNegative1253737 - 125513152170.7
hypothetical proteinBFD68_18635Not AvailablePositive1255316 - 125566912720.6
transporterBFD68_18640Not AvailableNegative1255713 - 125640825529.7
cation transport regulatorBFD68_18645Not AvailableNegative1256557 - 12567969292.53
sodium-potassium/proton antiporter chaaBFD68_18650Not AvailablePositive1257066 - 125816639166.9
toxin ldr, type i toxin-antitoxin system family proteinBFD68_18655Not AvailablePositive1258544 - 12586785019.32
3-deoxy-8-phosphooctulonate synthaseBFD68_18660Not AvailableNegative1258827 - 125968130834.5
hypothetical proteinBFD68_18665Not AvailableNegative1259717 - 126052630843.1

Displaying genes 1631 – 1640 of 5252 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total