Photobacterium damselae subsp. piscicida strain L091106-03H

CoccusMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae subsp. piscicida strain L091106-03H is a Gram-negative, coccus-shaped bacterium primarily found in marine environments, specifically within Italian aquaculture. This strain demonstrates mobility, facilitated by the presence of flagella, which enhances its ability to navigate through aquatic habitats. The bacterium exhibits a mesophilic temperature range, indicating that it thrives in moderate temperature conditions typically found in marine aquaculture settings. It possesses three replicons, suggesting a complex genomic organization that may contribute to its adaptability and pathogenic potential. Photobacterium damselae subsp. piscicida is known to infect various hosts, including Homo sapiens and Alca torda, leading to health complications such as soft-tissue infections. This pathogenicity highlights the potential risks associated with interactions between humans and marine ecosystems, particularly in aquaculture practices. The strain is cataloged under several accessions, including MCFX00000000.2, NZ_MCFX02000015.1, and NZ_MCFX02000016.1, which may facilitate further research and characterization of its genetic and phenotypic traits. In summary, the presence of Photobacterium damselae subsp. piscicida in aquaculture and its pathogenic effects on both humans and marine birds underline the importance of monitoring microbial populations in these environments. Understanding its behavior and interactions within the marine ecosystem can inform practices to mitigate health risks associated with aquaculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainsubsp. piscicida strain L091106-03H

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Photobacterium damselae subsp. piscicida strain L091106-03H
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
HabitatItalian aquaculture; Marine
Biotic relationshipNot Available
Host(s)Homo sapiens, Alca torda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae subsp. piscicida strain L091106-03H

Gene Summary

Adenine Count

1223455 bp

Thymine Count

1223852 bp

Guanine Count

848705 bp

Cytosine Count

842999 bp

Genome Length

4324838 bp

Protein-coding Genes

3464 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yran family proteinBEI67_01720Not AvailableNegative336144 - 33652714798.9
nicotinate-nucleotide diphosphorylaseBEI67_01725Not AvailablePositive336755 - 33764231984.4
penicillin-binding proteinBEI67_01730Not AvailableNegative337692 - 33961470580.0
16s rrna (cytidine(1402)-2'-o)-methyltransferaseBEI67_01735Not AvailablePositive339667 - 34052731342.7
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive340641 - 341046Not Available
16s rrna (cytosine(1402)-n(4))-methyltransferaseBEI67_01745Not AvailablePositive341271 - 34221834939.8
cell division protein ftslBEI67_01750Not AvailablePositive342215 - 34253812126.9
peptidoglycan glycosyltransferase ftsiBEI67_01755Not AvailablePositive342541 - 34427163069.7
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseBEI67_01760Not AvailablePositive344296 - 34581353977.3
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseBEI67_01765Not AvailablePositive345810 - 34719249013.8

Displaying genes 311 – 320 of 3613 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft-tissue infectionCausesPMC8231020

Displaying health effects 1 – 1 of 1 in total