Agrobacterium deltaense strain T3F4

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium deltaense strain T3F4 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain possesses flagella, which suggests motility capabilities. It has been documented with a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accessions MCAR00000000.1. The presence of flagella can enhance the bacterium's ability to navigate its environment, potentially contributing to its ecological adaptability. While specific habitat preferences or interactions with other organisms are not provided, the motility conferred by flagella may aid in colonization of plant hosts or other substrates, a characteristic trait of the Agrobacterium genus. In summary, Agrobacterium deltaense strain T3F4 exhibits essential traits such as being Gram-negative, rod-shaped, having flagella, and possessing a single replicon. These features may play a significant role in its biological functions and ecological interactions, particularly in environments where motility is beneficial for survival and growth.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium deltae
Strainnse strain T3F4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium deltaense strain T3F4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium deltaense strain T3F4 T3F4_scaffold9, whole genome

Gene Summary

Adenine Count

1139291 bp

Thymine Count

1127910 bp

Guanine Count

1679402 bp

Cytosine Count

1694066 bp

Genome Length

5640671 bp

Protein-coding Genes

5124 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aldehyde dehydrogenaseBCY90_11370Not AvailablePositive4760452 - 476196954785.4
oxidoreductaseBCY90_11375Not AvailablePositive4761966 - 476331248310.6
glycine/betaine abc transporterBCY90_11380Not AvailablePositive4763390 - 476424131234.4
glycine/betaine abc transporterBCY90_11385Not AvailablePositive4764327 - 476541839240.5
abc transporter permeaseBCY90_11390Not AvailablePositive4765433 - 476628129930.6
abc transporter permeaseBCY90_11395Not AvailablePositive4766278 - 476714130562.3
hydroxyproline-2-epimeraseBCY90_11400Not AvailablePositive4767154 - 476815236092.3
cytochrome c oxidase subunit ivBCY90_11405Not AvailableNegative4768182 - 476851412506.9
bb3-type cytochrome oxidase subunit ivBCY90_11410Not AvailableNegative4768529 - 476925427150.3
cytochrome-c oxidaseBCY90_11415Not AvailableNegative4769267 - 476997125473.6

Displaying genes 4411 – 4420 of 5212 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.