Agrobacterium deltaense strain T3F4

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium deltaense strain T3F4 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain possesses flagella, which suggests motility capabilities. It has been documented with a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accessions MCAR00000000.1. The presence of flagella can enhance the bacterium's ability to navigate its environment, potentially contributing to its ecological adaptability. While specific habitat preferences or interactions with other organisms are not provided, the motility conferred by flagella may aid in colonization of plant hosts or other substrates, a characteristic trait of the Agrobacterium genus. In summary, Agrobacterium deltaense strain T3F4 exhibits essential traits such as being Gram-negative, rod-shaped, having flagella, and possessing a single replicon. These features may play a significant role in its biological functions and ecological interactions, particularly in environments where motility is beneficial for survival and growth.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium deltae
Strainnse strain T3F4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium deltaense strain T3F4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium deltaense strain T3F4 T3F4_scaffold9, whole genome

Gene Summary

Adenine Count

1139291 bp

Thymine Count

1127910 bp

Guanine Count

1679402 bp

Cytosine Count

1694066 bp

Genome Length

5640671 bp

Protein-coding Genes

5124 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fad-dependent oxidoreductaseBCY90_08095Not AvailablePositive4021419 - 402252238937.8
threonine ammonia-lyaseBCY90_08100Not AvailableNegative4022531 - 402350533725.7
dihydroxy-acid dehydrataseBCY90_08105Not AvailableNegative4023619 - 402540364528.0
2-hydroxy-3-oxopropionate reductaseBCY90_08110Not AvailableNegative4025413 - 402631530873.2
nad-dependent epimeraseBCY90_08115Not AvailableNegative4026312 - 402729835535.9
fad-binding proteinBCY90_08120Not AvailablePositive4027498 - 402894352245.0
gntr family transcriptional regulatorBCY90_08125Not AvailablePositive4029061 - 402977726604.8
fumarylacetoacetate hydrolaseBCY90_08130Not AvailablePositive4029979 - 403113941296.6
abc transporter permeaseBCY90_08135Not AvailablePositive4031161 - 403169120078.2
l-dehydroascorbate transporter large permease subunitBCY90_08140Not AvailablePositive4031696 - 403297344320.0

Displaying genes 3741 – 3750 of 5212 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.