Agrobacterium deltaense strain T3F4

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium deltaense strain T3F4 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain possesses flagella, which suggests motility capabilities. It has been documented with a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accessions MCAR00000000.1. The presence of flagella can enhance the bacterium's ability to navigate its environment, potentially contributing to its ecological adaptability. While specific habitat preferences or interactions with other organisms are not provided, the motility conferred by flagella may aid in colonization of plant hosts or other substrates, a characteristic trait of the Agrobacterium genus. In summary, Agrobacterium deltaense strain T3F4 exhibits essential traits such as being Gram-negative, rod-shaped, having flagella, and possessing a single replicon. These features may play a significant role in its biological functions and ecological interactions, particularly in environments where motility is beneficial for survival and growth.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium deltae
Strainnse strain T3F4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium deltaense strain T3F4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium deltaense strain T3F4 T3F4_scaffold9, whole genome

Gene Summary

Adenine Count

1139291 bp

Thymine Count

1127910 bp

Guanine Count

1679402 bp

Cytosine Count

1694066 bp

Genome Length

5640671 bp

Protein-coding Genes

5124 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
branched-chain amino acid abc transporter atp-binding proteinBCY90_24750Not AvailablePositive3078611 - 307937527191.1
abc transporter atp-binding proteinBCY90_24755Not AvailablePositive3079356 - 308007225529.1
hypothetical proteinBCY90_24760Not AvailablePositive3080310 - 308124833687.6
transposaseBCY90_24765Not AvailableNegative3081297 - 308222634315.8
rpir family transcriptional regulatorBCY90_24770Not AvailablePositive3082544 - 308335929084.9
5-dehydro-2-deoxygluconokinaseBCY90_24775Not AvailablePositive3083568 - 308548470257.7
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)BCY90_24780Not AvailablePositive3085481 - 308730765841.5
myo-inosose-2 dehydrataseBCY90_24785Not AvailablePositive3087309 - 308821732809.1
5-deoxy-glucuronate isomeraseBCY90_24790Not AvailablePositive3088408 - 308922029985.1
myo-inositol 2-dehydrogenaseBCY90_24795Not AvailablePositive3089410 - 309053741099.1

Displaying genes 2881 – 2890 of 5212 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.