Vibrio parahaemolyticus strain 04-2548_100

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio parahaemolyticus strain 04-2548_100 is a Gram-negative, rod-shaped bacterium that thrives in aquatic environments as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. This strain is characterized by its heterotrophic energy source and mobility, enabled by the presence of flagella. It has a mesophilic temperature range, with an optimal growth temperature of 20°C, which suggests it is well-suited for warm aquatic habitats. Vibrio parahaemolyticus strain 04-2548_100 is free-living and possesses a single replicon and a double membrane structure. Its biotic relationships include a diverse range of hosts, such as Homo sapiens, various aquatic species including Danio rerio and Penaeus vannamei, and other organisms like Ruditapes philippinarum and Holothuroidea. This strain is associated with significant health impacts in humans, including ear infections, wound infections, and various gastrointestinal illnesses such as gastroenteritis and food poisoning. It is particularly noted for causing bacterial seafoodborne gastroenteritis, highlighting its relevance to public health and food safety. The presence of V. parahaemolyticus in aquatic environments, particularly in association with marine organisms, underscores its ecological role in aquatic ecosystems. Its pathogenicity in humans, coupled with its free-living nature, illustrates the complex interactions between aquatic bacteria and their hosts, emphasizing the importance of monitoring such pathogens in relation to seafood consumption and public health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio parahaemolyticus
Strainstrain 04-2548_100

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Vibrio parahaemolyticus strain 04-2548_100
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Homo sapiens, Danio rerio, Pancrustacea
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityHuman

Genome Summary

Vibrio parahaemolyticus strain 04-2548_100 contig9, whole genome

Gene Summary

Adenine Count

1498374 bp

Thymine Count

1502912 bp

Guanine Count

1237773 bp

Cytosine Count

1225282 bp

Genome Length

5464342 bp

Protein-coding Genes

3657 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methionine abc transporter substrate-binding proteinBA740_11845Not AvailableNegative3810936 - 381173928981.5
rna polymerase sigma factor rpodBA740_11855Not AvailableNegative3812240 - 381410270714.8
dna primaseBA740_11860Not AvailableNegative3814202 - 381596266250.1
glutamyl-trna amidotransferaseBA740_11865Not AvailableNegative3816111 - 381655416146.8
30s ribosomal protein s21BA740_11870Not AvailableNegative3816583 - 38167988487.44
trna n6-adenosine(37)-threonylcarbamoyltransferase complex transferase subunit tsadBA740_11875Not AvailablePositive3817029 - 381804536258.9
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthaseBA740_11880Not AvailablePositive3818203 - 381901830159.2
glycerol-3-phosphate acyltransferaseBA740_11885Not AvailableNegative3819040 - 381965121732.5
dihydroneopterin aldolaseBA740_11890Not AvailablePositive3819900 - 382025913398.2
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseBA740_11895Not AvailablePositive3820256 - 382073818535.2

Displaying genes 3371 – 3380 of 3657 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
VibriosisCausesPMC10472736
Acute gastroenteritisCausesPMC11171697
Wound infectionsCausesPMC11171697
SepticemiaCausesPMC11171697
Food poisoningCausesPMC12108532
Vibrio infectionsCausesPMC12108532
Acute gastroenteritisCausesPMC12849298
Wound infectionsCausesPMC12849298
Ear infectionsCausesPMC12849298
SepticemiaCausesPMC12849298

Displaying health effects 1 – 10 of 23 in total