Parafrankia colletiae strain Cc1.17

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Parafrankia

Description

Parafrankia colletiae strain Cc1.17 is characterized by having a single replicon, which suggests a streamlined genomic organization. The strain is cataloged under the accession number MBLM00000000.1, indicating that it is documented in a biological database for reference and further study. As a member of the genus Parafrankia, this strain may exhibit specific traits and behaviors typical of its relatives, though such traits are not specified in the provided evidence. The single replicon may contribute to its adaptability and efficiency in resource utilization, which can be advantageous in various ecological niches. In summary, Parafrankia colletiae strain Cc1.17's single replicon may enhance its genomic stability and adaptability, potentially allowing it to thrive in diverse environments. Further research could elucidate the ecological roles and interactions of this strain within its habitat, contributing to our understanding of microbial diversity and function.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusParafrankia
SpeciesParafrankia colletiae
Strainstrain Cc1.17

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parafrankia colletiae strain Cc1.17 contig_99, whole genome

Gene Summary

Adenine Count

1197090 bp

Thymine Count

1189795 bp

Guanine Count

2983559 bp

Cytosine Count

2986432 bp

Genome Length

8361025 bp

Protein-coding Genes

6343 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dimethylallyltranstransferaseCC117_05555Not AvailableNegative6027346 - 602836235291.0
phytoene dehydrogenaseCC117_05560Not AvailableNegative6028359 - 603000556423.6
squalene synthase hpndCC117_05565Not AvailableNegative6030002 - 603090432038.1
squalene synthase hpncCC117_05570Not AvailableNegative6030901 - 603192335381.4
short-chain dehydrogenaseCC117_05575Not AvailableNegative6032462 - 603329228251.4
tetr family transcriptional regulatorCC117_05585Not AvailableNegative6034249 - 603517830871.0
hypothetical proteinCC117_05590Not AvailablePositive6035357 - 603759178926.6
hypothetical proteinCC117_05595Not AvailableNegative6037781 - 603912147751.9
glycerate kinaseCC117_05600Not AvailablePositive6039350 - 604052238352.0
abc transporter substrate-binding proteinCC117_05605Not AvailableNegative6040526 - 604171942276.6

Displaying genes 4631 – 4640 of 6396 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.