Parafrankia colletiae strain Cc1.17

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Parafrankia

Description

Parafrankia colletiae strain Cc1.17 is characterized by having a single replicon, which suggests a streamlined genomic organization. The strain is cataloged under the accession number MBLM00000000.1, indicating that it is documented in a biological database for reference and further study. As a member of the genus Parafrankia, this strain may exhibit specific traits and behaviors typical of its relatives, though such traits are not specified in the provided evidence. The single replicon may contribute to its adaptability and efficiency in resource utilization, which can be advantageous in various ecological niches. In summary, Parafrankia colletiae strain Cc1.17's single replicon may enhance its genomic stability and adaptability, potentially allowing it to thrive in diverse environments. Further research could elucidate the ecological roles and interactions of this strain within its habitat, contributing to our understanding of microbial diversity and function.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusParafrankia
SpeciesParafrankia colletiae
Strainstrain Cc1.17

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parafrankia colletiae strain Cc1.17 contig_99, whole genome

Gene Summary

Adenine Count

1197090 bp

Thymine Count

1189795 bp

Guanine Count

2983559 bp

Cytosine Count

2986432 bp

Genome Length

8361025 bp

Protein-coding Genes

6343 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chorismate synthaseCC117_13390Not AvailablePositive2138361 - 213954541170.6
shikimate kinaseCC117_13395Not AvailablePositive2139638 - 214017418417.1
3-dehydroquinate synthaseCC117_13400Not AvailablePositive2140174 - 214128939162.2
antibiotic biosynthesis monooxygenaseCC117_13405Not AvailableNegative2141340 - 214162710300.0
elongation factor pCC117_13410Not AvailablePositive2141864 - 214242720044.9
transcription antitermination factor nusbCC117_13415Not AvailablePositive2142499 - 214296315918.5
transcriptional regulatorCC117_13420Not AvailableNegative2143170 - 214366717992.3
bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferaseCC117_13425Not AvailablePositive2144130 - 214483424717.7
aspartate carbamoyltransferaseCC117_13430Not AvailablePositive2144875 - 214580733302.2
dihydroorotaseCC117_13435Not AvailablePositive2145804 - 214715946762.8

Displaying genes 1641 – 1650 of 6396 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.