Helicobacter pylori strain 3053

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain 3053 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and the presence of flagella. This organism is typically found in a host-associated habitat, displaying a free-living biotic relationship. Its optimal growth temperature is 37°C, placing it in the mesophilic temperature range. The strain possesses a single replicon and is surrounded by two membranes. H. pylori strain 3053 has a wide range of hosts, including Homo sapiens, Gallus gallus, Aves, various primates, Mammalia, and Rodentia, as well as amoebas. This diverse host range indicates its adaptability and potential ecological significance in different environments. The bacterium is notably associated with several health effects, primarily related to gastrointestinal diseases. In humans, it is linked to chronic gastric inflammation, peptic ulcer disease, and various forms of gastric cancer, including gastric adenocarcinoma and MALT lymphoma. Other associated conditions include gastritis, dyspepsia, and intestinal diseases. The pathogenicity of H. pylori strain 3053 underscores its role in the development of serious health complications, particularly in the human host, where it can induce both symptomatic and asymptomatic responses. The strain's ability to thrive in the acidic environment of the stomach, alongside its pathogenic effects, highlights its ecological role in the gastric microbiome. Understanding its interactions with hosts and its contribution to gastrointestinal health and disease is crucial for developing effective therapeutic strategies.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain 3053

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain 3053
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain 3053


Gene Summary

Adenine Count

493336 bp

Thymine Count

489887 bp

Guanine Count

321095 bp

Cytosine Count

306319 bp

Genome Length

1610637 bp

Protein-coding Genes

1424 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBB453_00005Not AvailableNegative136 - 51914579.0
16s ribosomal rnaNot AvailableNot AvailablePositive803 - 2312Not Available
sodium:proton antiporterBB453_00015Not AvailablePositive3713 - 481939978.9
lipopolysaccharide biosynthesis proteinBB453_00020Not AvailableNegative4833 - 586440276.8
lipopolysaccharide 1,2-glucosyltransferaseBB453_00025Not AvailableNegative5888 - 60014242.15
hypothetical proteinBB453_00030Not AvailablePositive6158 - 751052539.6
5s ribosomal rnaNot AvailableNot AvailablePositive6834 - 6951Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive7181 - 10066Not Available
molecular chaperone htpgBB453_00035Not AvailablePositive7613 - 947871352.3
sel1 repeat protein hcpaBB453_00040Not AvailableNegative9687 - 1043927325.0

Displaying genes 1 – 10 of 1466 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

31 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001767oxalateC2O4Chemical structure of oxalateNot available
Average88.019Da
Monoisotopic87.979658488Da
BASm0001785(2R,3R)-tartrateC4H6O6Chemical structure of (2R,3R)-tartrate87-69-4
Average150.0868Da
Monoisotopic150.0164379Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002131(3S)-hydroxy-3-methylglutaryl-CoAC27H39N7O20P3SChemical structure of (3S)-hydroxy-3-methylglutaryl-CoANot available
Average906.62Da
Monoisotopic906.1183419Da

Displaying 1–10 of 31 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 66 in total