Agrobacterium vitis strain AT6

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Gillisella

Description

Agrobacterium vitis strain AT6 is a Gram-negative, rod-shaped bacterium characterized by its aerobic oxygen requirement and the presence of flagella. This strain is known to have a single replicon and is associated with various plant hosts, notably Vitis species, including Vitis vinifera, as well as Ficus benjamina. One of the most significant health effects linked to Agrobacterium vitis strain AT6 is its role in the development of crown gall disease, particularly affecting grapevines. This disease manifests as grapevine crown galls (CGs), which are tumor-like growths that can severely impact the health and productivity of affected plants. The presence of CGs is particularly concerning in viticulture, as they can lead to reduced vigor and yield in grapevines, which are economically important for wine production. The interactions between Agrobacterium vitis strain AT6 and its plant hosts highlight the ecological implications of this bacterium. As a pathogen, it engages in complex relationships with its hosts, influencing plant health and agricultural productivity. Understanding the traits of this strain can aid in developing management strategies for crown gall disease, ultimately contributing to healthier grapevine cultivation practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusGillisella
SpeciesGillisella vitis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium vitis strain AT6
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatplant root surfaces
Biotic relationshipNot Available
Host(s)Viridiplantae, Vitis sp., Ficus benjamina
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium vitis strain AT6 NODE_95_length_510_cov_16.955614,

Gene Summary

Adenine Count

1303463 bp

Thymine Count

1292906 bp

Guanine Count

1751862 bp

Cytosine Count

1771464 bp

Genome Length

6120785 bp

Protein-coding Genes

5342 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phytoene/squalene synthase family proteinBBK77_011490Not AvailableNegative2550689 - 255155230725.4
hypothetical proteinBBK77_011495Not AvailableNegative2551557 - 255194313643.5
protein translocase subunit secdfBBK77_011500Not AvailableNegative2551947 - 255451791748.9
preprotein translocase subunit yajcBBK77_011505Not AvailableNegative2554727 - 255509813256.4
duf815 domain-containing proteinBBK77_011510Not AvailablePositive2555308 - 255617432235.5
peptidoglycan dd-metalloendopeptidase family proteinBBK77_011515Not AvailableNegative2556290 - 255792154887.4
protein-l-isoaspartate(d-aspartate) o-methyltransferaseBBK77_011520Not AvailableNegative2558146 - 255879924029.4
5'/3'-nucleotidase sureBBK77_011525Not AvailableNegative2558796 - 255956627573.9
serine--trna ligaseBBK77_011530Not AvailableNegative2559599 - 256088247250.5
twin-arginine translocase subunit tatcBBK77_011535Not AvailableNegative2560958 - 256177030500.2

Displaying genes 2331 – 2340 of 5453 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Grapevine crown gallsCausesPMC10745273
CgsCausesPMC10745273
Crown gallCausesPMC10811719
Grapevine crown gallCausesPMC10811719
Crown gall disease of grapevineCausesPMC9219206
Crown gallCausesPMC9219206

Displaying health effects 1 – 6 of 6 in total