Candidatus Scalindua rubra

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Candidatus Brocadiia

Order

Candidatus Brocadiales

Family

Candidatus Scalinduaceae

Genus

Candidatus Scalindua

Description

Candidatus Scalindua rubra is a noteworthy member of the microbial community characterized by its unique genomic traits. This organism has been identified as possessing a single replicon, indicating a streamlined genomic structure that may contribute to its ecological adaptability. Its genomic data is cataloged under the accession number MAYW00000000.1, which serves as a reference for further studies and characterizations. The presence of a single replicon in Candidatus Scalindua rubra suggests a potential efficiency in replication and metabolic processes. This trait may facilitate its survival in specific environments, particularly in ecosystems where resource availability fluctuates. The organism's streamlined genome could also indicate a specialization for particular ecological niches, which aligns with the behaviors observed in related microbial taxa. Candidatus Scalindua rubra plays a significant role in biogeochemical cycles, particularly in nitrogen cycling. As a member of the anammox (anaerobic ammonium oxidation) group, it is likely involved in the conversion of ammonium and nitrite to nitrogen gas, contributing to the nitrogen balance within its environment. This ecological function is crucial, as it influences nutrient dynamics and can affect overall ecosystem health and productivity. In summary, Candidatus Scalindua rubra, with its single replicon and specific genomic characteristics, exemplifies the intricate relationships between microbial life and ecological processes, particularly in nitrogen cycling. Its study may provide insights into the functioning of microbial communities and their roles in ecosystem sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassCandidatus Brocadiia
OrderCandidatus Brocadiales
FamilyCandidatus Scalinduaceae
GenusCandidatus Scalindua
SpeciesCandidatus Scalindua rubra
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Candidatus Scalindua rubra isolate BSI-1 SCARUB_contig000200,

Gene Summary

Adenine Count

231367 bp

Thymine Count

225540 bp

Guanine Count

137749 bp

Cytosine Count

137801 bp

Genome Length

732457 bp

Protein-coding Genes

702 genes

Non-Coding Genes

7 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
6-phosphogluconolactonaseSCARUB_03659Not AvailableNegative78935 - 7969028271.9
transketolase 1 thiamin-binding isozymeSCARUB_03660Not AvailableNegative79704 - 8173774811.2
glucokinaseSCARUB_03661Not AvailableNegative81996 - 8302137373.8
hypothetical proteinSCARUB_03662Not AvailableNegative83213 - 8358113831.6
pilz domain proteinSCARUB_03663Not AvailableNegative83743 - 8413515034.9
carboxylate-amine ligase ybdkSCARUB_03664Not AvailablePositive84840 - 849564349.18
ycfa-like proteinSCARUB_03665Not AvailableNegative85140 - 853588255.91
hypothetical proteinSCARUB_03666Not AvailableNegative85358 - 855587355.68
putative arginyl-trna--protein transferaseSCARUB_03667Not AvailableNegative85675 - 8637327360.8
hypothetical proteinSCARUB_03668Not AvailableNegative86656 - 8714417137.1

Displaying genes 81 – 90 of 709 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.