Vibrio lentus strain 5F79

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio lentus strain 5F79 is characterized by having a single replicon, which is significant in understanding its genomic organization and replication mechanisms. This trait may influence its adaptability and survival in various environments. The strain is cataloged under the accession number MAKA00000000.1, which provides a reference for researchers seeking to access its genomic data. As a member of the Vibrio genus, V. lentus is likely to share common ecological roles with other Vibrio species, particularly in marine environments. Members of this genus are often involved in nutrient cycling and can impact aquatic ecosystems. Their presence in diverse habitats can indicate the health of marine environments, and their interactions with other microorganisms may contribute to the overall microbial community structure. This single-replicon characteristic may also have implications for the strain's metabolic capabilities and potential interactions with other species. Understanding the genomic features of Vibrio lentus strain 5F79 can lead to insights into its ecological role and its potential applications in biotechnology or environmental monitoring. The study of such strains can enhance our comprehension of microbial dynamics in marine settings, particularly as they relate to environmental changes and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio lentus
Strainstrain 5F79

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio lentus strain 5F79
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio lentus strain 5F79 5F79_contig_98, whole genome shotgun

Gene Summary

Adenine Count

1455069 bp

Thymine Count

1447151 bp

Guanine Count

1131557 bp

Cytosine Count

1139569 bp

Genome Length

5173686 bp

Protein-coding Genes

4409 genes

Non-Coding Genes

27 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion system proteinA6E08_10765Not AvailableNegative4852613 - 485324223272.8
type iii secretion proteinA6E08_10770Not AvailableNegative4853221 - 485388625836.3
escj/yscj/hrcj family type iii secretion inner membrane ring proteinA6E08_10775Not AvailableNegative4853879 - 485461026780.7
esci/ysci/hrpb family type iii secretion system inner rod proteinA6E08_10780Not AvailableNegative4854697 - 485504112598.9
type iii secretion effector, yopr familyA6E08_10785Not AvailableNegative4855050 - 485569723936.1
type iii secretion protein, yscg familyA6E08_10790Not AvailableNegative4855697 - 485605312866.4
escf/yscf/hrpa family type iii secretion system needle major subunitA6E08_10795Not AvailableNegative4856057 - 48563059154.79
esce/ysce/ssae family type iii secretion system needle protein co-chaperoneA6E08_10800Not AvailableNegative4856322 - 48565287714.26
escd/yscd/hrpq family type iii secretion system inner membrane ring proteinA6E08_10805Not AvailableNegative4856515 - 485781648014.4
escc/yscc/hrcc family type iii secretion system outer membrane ring proteinA6E08_10810Not AvailableNegative4857822 - 485969368556.5

Displaying genes 4181 – 4190 of 4436 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.