Gelidibacter algens strain ACAM 536

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Gelidibacter

Description

Gelidibacter algens strain ACAM 536 is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number LZRN00000000.1, allowing for its identification and reference in genomic databases. As a member of the genus Gelidibacter, this strain has been isolated from cold environments, suggesting its adaptability to low-temperature habitats. This adaptation may provide insights into the ecological roles that Gelidibacter species play in cold ecosystems, potentially contributing to nutrient cycling and organic matter decomposition. The ability of Gelidibacter algens to thrive in such environments may also offer avenues for biotechnological applications, particularly in processes that require cold-active enzymes or bioproducts. Overall, the characteristics of Gelidibacter algens strain ACAM 536 highlight its specialized adaptations to cold habitats and its potential relevance in ecological and biotechnological contexts.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusGelidibacter
SpeciesGelidibacter algens
Strainstrain ACAM 536

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gelidibacter algens strain ACAM 536 contig00140, whole genome

Gene Summary

Adenine Count

1392847 bp

Thymine Count

1434383 bp

Guanine Count

841581 bp

Cytosine Count

838123 bp

Genome Length

4506948 bp

Protein-coding Genes

3657 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
asparagine--trna ligaseA9996_05190Q11Q97Negative1275844 - 127727754950.5
hypothetical proteinA9996_05195Not AvailableNegative1277549 - 127874546360.4
transporterA9996_05200Not AvailableNegative1278998 - 128140691234.7
hypothetical proteinA9996_05205Not AvailableNegative1281458 - 128274149815.7
ribosome recycling factorA9996_05210A5FMF6Negative1282803 - 128336020854.1
ump kinaseA9996_05215A0LXJ4Negative1283422 - 128412925622.2
gliding motility lipoprotein glddA9996_05220Not AvailableNegative1284283 - 128486422188.6
magnesium/cobalt efflux proteinA9996_05225Q54318Negative1284861 - 128616849538.5
single-stranded dna-binding proteinA9996_05230Q9XJG4Negative1286192 - 128662616479.1
a/g-specific adenine glycosylaseA9996_05235P83847Negative1286925 - 128796840227.2

Displaying genes 1011 – 1020 of 3705 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

194 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 194 metabolites

Health Effects

No health effects information available for this bacterium.