Ruegeria sp. PBVC088

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. PBVC088 is a bacterial strain characterized by having a single replicon, which indicates a streamlined genomic organization. This trait can suggest certain advantages in replication efficiency and adaptability within its ecological niche. The strain is cataloged under the accession number LZNT00000000.1, which provides a reference point for genomic studies and comparisons with related organisms. Ruegeria species are known for their ecological roles, particularly in marine environments where they often participate in nutrient cycling and may contribute to the health of marine ecosystems. While specific ecological interactions and metabolic pathways for Ruegeria sp. PBVC088 are not detailed here, the genus is typically associated with processes such as the degradation of organic matter and the potential for symbiotic relationships with marine organisms. In summary, Ruegeria sp. PBVC088, with its single replicon and designated accessions, exemplifies the characteristics of its genus, which is adapted to thrive in marine habitats. The understanding of its genomic structure may provide insights into its ecological functions and interactions within its environment, highlighting the importance of studying microbial diversity in oceanic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria sp. PBVC088
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria sp. PBVC088 contig99, whole genome shotgun sequence.

Gene Summary

Adenine Count

1016085 bp

Thymine Count

1010363 bp

Guanine Count

1872334 bp

Cytosine Count

1883747 bp

Genome Length

5782529 bp

Protein-coding Genes

5358 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-mannonate oxidoreductaseA9320_13415Not AvailablePositive771845 - 77331152401.5
trap dicarboxylate transporter subunit dctmA9320_13420Not AvailableNegative773364 - 77471948070.5
small integral membrane transport proteinA9320_13425Not AvailableNegative774724 - 77603749439.7
abc transporter substrate-binding proteinA9320_13430Not AvailableNegative776124 - 77722439807.5
hypothetical proteinA9320_13435Not AvailableNegative777447 - 77908160477.1
hypothetical proteinA9320_13440Not AvailablePositive779271 - 78118168426.0
l-rhamnose isomeraseA9320_13445Not AvailableNegative781232 - 78247346009.5
short-chain dehydrogenaseA9320_13450Not AvailableNegative782524 - 78462676069.2
deor family transcriptional regulatorA9320_13455Not AvailablePositive784813 - 78561929362.6
rhamnose abc transporter substrate-binding proteinA9320_13460Not AvailablePositive785662 - 78666634532.2

Displaying genes 861 – 870 of 5492 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.