Ruegeria sp. PBVC088

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. PBVC088 is a bacterial strain characterized by having a single replicon, which indicates a streamlined genomic organization. This trait can suggest certain advantages in replication efficiency and adaptability within its ecological niche. The strain is cataloged under the accession number LZNT00000000.1, which provides a reference point for genomic studies and comparisons with related organisms. Ruegeria species are known for their ecological roles, particularly in marine environments where they often participate in nutrient cycling and may contribute to the health of marine ecosystems. While specific ecological interactions and metabolic pathways for Ruegeria sp. PBVC088 are not detailed here, the genus is typically associated with processes such as the degradation of organic matter and the potential for symbiotic relationships with marine organisms. In summary, Ruegeria sp. PBVC088, with its single replicon and designated accessions, exemplifies the characteristics of its genus, which is adapted to thrive in marine habitats. The understanding of its genomic structure may provide insights into its ecological functions and interactions within its environment, highlighting the importance of studying microbial diversity in oceanic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria sp. PBVC088
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria sp. PBVC088 contig99, whole genome shotgun sequence.

Gene Summary

Adenine Count

1016085 bp

Thymine Count

1010363 bp

Guanine Count

1872334 bp

Cytosine Count

1883747 bp

Genome Length

5782529 bp

Protein-coding Genes

5358 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
neutral zinc metallopeptidaseA9320_08125Not AvailableNegative4851077 - 485146014695.1
2'-5' rna ligaseA9320_08130Not AvailableNegative4851457 - 485199319381.2
sugar kinaseA9320_08135Not AvailableNegative4851990 - 485293132123.1
glutamate--trna ligaseA9320_08140Not AvailablePositive4853091 - 485442549397.8
hypothetical proteinA9320_08145Not AvailableNegative4854535 - 485510120634.1
rrf2 family transcriptional regulatorA9320_08150Not AvailablePositive4855195 - 485567117185.8
glycine cleavage system protein tA9320_08155Not AvailablePositive4855924 - 485705440019.1
glycine cleavage system protein hA9320_08160Not AvailablePositive4857070 - 485742913345.7
hypothetical proteinA9320_08165Not AvailablePositive4857625 - 485790610493.5
glycine dehydrogenase (aminomethyl-transferring)A9320_08170Not AvailablePositive4857923 - 4860769103960.0

Displaying genes 4631 – 4640 of 5492 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.