Ruegeria sp. PBVC088

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. PBVC088 is a bacterial strain characterized by having a single replicon, which indicates a streamlined genomic organization. This trait can suggest certain advantages in replication efficiency and adaptability within its ecological niche. The strain is cataloged under the accession number LZNT00000000.1, which provides a reference point for genomic studies and comparisons with related organisms. Ruegeria species are known for their ecological roles, particularly in marine environments where they often participate in nutrient cycling and may contribute to the health of marine ecosystems. While specific ecological interactions and metabolic pathways for Ruegeria sp. PBVC088 are not detailed here, the genus is typically associated with processes such as the degradation of organic matter and the potential for symbiotic relationships with marine organisms. In summary, Ruegeria sp. PBVC088, with its single replicon and designated accessions, exemplifies the characteristics of its genus, which is adapted to thrive in marine habitats. The understanding of its genomic structure may provide insights into its ecological functions and interactions within its environment, highlighting the importance of studying microbial diversity in oceanic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria sp. PBVC088
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria sp. PBVC088 contig99, whole genome shotgun sequence.

Gene Summary

Adenine Count

1016085 bp

Thymine Count

1010363 bp

Guanine Count

1872334 bp

Cytosine Count

1883747 bp

Genome Length

5782529 bp

Protein-coding Genes

5358 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spermidine/putrescine abc transporter permeaseA9320_01640Not AvailablePositive337086 - 33787728703.2
spermidine/putrescine abc transporter substrate-binding proteinA9320_01645Not AvailablePositive337929 - 33906541843.9
abc transporter atp-binding proteinA9320_01650Not AvailablePositive339135 - 34020838332.1
aminotransferaseA9320_01655Not AvailablePositive340213 - 34155048464.5
3-keto-5-aminohexanoate cleavage proteinA9320_01660Not AvailablePositive341552 - 34247833669.8
acetyltransferaseA9320_01665Not AvailablePositive342478 - 34295716817.9
acetylpolyamine aminohydrolaseA9320_01670Not AvailablePositive342954 - 34397936565.0
glycerol-3-phosphate dehydrogenaseA9320_01675Not AvailablePositive343976 - 34507639301.7
hypothetical proteinA9320_01680Not AvailablePositive345092 - 34544212477.9
lysr family transcriptional regulatorA9320_01685Not AvailableNegative345439 - 34636234199.3

Displaying genes 441 – 450 of 5492 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.