Ruegeria sp. PBVC088

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. PBVC088 is a bacterial strain characterized by having a single replicon, which indicates a streamlined genomic organization. This trait can suggest certain advantages in replication efficiency and adaptability within its ecological niche. The strain is cataloged under the accession number LZNT00000000.1, which provides a reference point for genomic studies and comparisons with related organisms. Ruegeria species are known for their ecological roles, particularly in marine environments where they often participate in nutrient cycling and may contribute to the health of marine ecosystems. While specific ecological interactions and metabolic pathways for Ruegeria sp. PBVC088 are not detailed here, the genus is typically associated with processes such as the degradation of organic matter and the potential for symbiotic relationships with marine organisms. In summary, Ruegeria sp. PBVC088, with its single replicon and designated accessions, exemplifies the characteristics of its genus, which is adapted to thrive in marine habitats. The understanding of its genomic structure may provide insights into its ecological functions and interactions within its environment, highlighting the importance of studying microbial diversity in oceanic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria sp. PBVC088
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria sp. PBVC088 contig99, whole genome shotgun sequence.

Gene Summary

Adenine Count

1016085 bp

Thymine Count

1010363 bp

Guanine Count

1872334 bp

Cytosine Count

1883747 bp

Genome Length

5782529 bp

Protein-coding Genes

5358 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-pseudoNot AvailableNot AvailablePositive4683447 - 4683530Not Available
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbA9320_26905Not AvailablePositive4683663 - 468443927723.4
hypothetical proteinA9320_26910Not AvailablePositive4684449 - 468477512317.0
3,4-dihydroxy-2-butanone-4-phosphate synthaseA9320_26915Not AvailablePositive4684907 - 468603440552.3
6,7-dimethyl-8-ribityllumazine synthaseA9320_26920Not AvailablePositive4686034 - 468658519210.9
transcription antitermination factor nusbA9320_26925Not AvailablePositive4686582 - 468705517961.6
hypothetical proteinA9320_26930Not AvailablePositive4687224 - 468756212282.4
hypothetical proteinA9320_26935Not AvailablePositive4687641 - 468797311658.6
hypothetical proteinA9320_26940Not AvailableNegative4688260 - 468899726697.9
hypothetical proteinA9320_26950Not AvailableNegative4690212 - 46904879389.26

Displaying genes 4471 – 4480 of 5492 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.