Ruegeria sp. PBVC088

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. PBVC088 is a bacterial strain characterized by having a single replicon, which indicates a streamlined genomic organization. This trait can suggest certain advantages in replication efficiency and adaptability within its ecological niche. The strain is cataloged under the accession number LZNT00000000.1, which provides a reference point for genomic studies and comparisons with related organisms. Ruegeria species are known for their ecological roles, particularly in marine environments where they often participate in nutrient cycling and may contribute to the health of marine ecosystems. While specific ecological interactions and metabolic pathways for Ruegeria sp. PBVC088 are not detailed here, the genus is typically associated with processes such as the degradation of organic matter and the potential for symbiotic relationships with marine organisms. In summary, Ruegeria sp. PBVC088, with its single replicon and designated accessions, exemplifies the characteristics of its genus, which is adapted to thrive in marine habitats. The understanding of its genomic structure may provide insights into its ecological functions and interactions within its environment, highlighting the importance of studying microbial diversity in oceanic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria sp. PBVC088
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria sp. PBVC088 contig99, whole genome shotgun sequence.

Gene Summary

Adenine Count

1016085 bp

Thymine Count

1010363 bp

Guanine Count

1872334 bp

Cytosine Count

1883747 bp

Genome Length

5782529 bp

Protein-coding Genes

5358 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
general secretion pathway protein gspfA9320_00235Not AvailablePositive59160 - 6036842489.4
hypothetical proteinA9320_00240Not AvailablePositive60686 - 72034372015.0
monofunctional biosynthetic peptidoglycan transglycosylaseA9320_00245Not AvailableNegative72098 - 7283527004.1
glutamate synthase subunit alphaA9320_00250Not AvailableNegative73086 - 77621164501.0
hypothetical proteinA9320_00255Not AvailableNegative77713 - 7813815619.4
hypothetical proteinA9320_00260Not AvailableNegative78159 - 7894128765.4
dihydropyrimidine dehydrogenaseA9320_00265Not AvailableNegative79061 - 8049751950.7
undecaprenyl-diphosphataseA9320_00270Not AvailablePositive80725 - 8152828606.9
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhA9320_00275Not AvailableNegative81532 - 8200216979.6
ribosome silencing factorA9320_00280Not AvailableNegative82006 - 8235912839.3

Displaying genes 161 – 170 of 5492 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.