Mycobacterium colombiense strain E1334

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Mycobacteriaceae

Genus

Mycobacterium

Description

Mycobacterium colombiense strain E1334 is characterized by the presence of flagella, which is a notable trait among mycobacteria, typically recognized for their lack of motility. This feature may provide insights into its ecological adaptations and interactions with hosts. The strain has a single replicon, indicating a streamlined genomic architecture that could influence its replication and maintenance in various environments. This strain has been associated with hosts including Homo sapiens and other Metazoa, suggesting its potential role as a pathogen or symbiont in complex biological systems. The presence of this strain in human hosts raises questions about its pathogenicity and the mechanisms it employs to establish itself within human tissues. The genomic information for Mycobacterium colombiense strain E1334 is cataloged under the accession number LZKI00000000.1, which provides a reference for further genetic and functional studies. Understanding the genetic makeup of this strain can contribute to insights into its evolutionary history and ecological niche. Overall, the presence of flagella, in conjunction with its interactions with mammalian hosts, positions Mycobacterium colombiense strain E1334 as an intriguing subject for further research in microbial ecology and pathogenesis, highlighting the diverse strategies employed by microorganisms in adapting to various environments.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium colombiense
Strainstrain E1334

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mycobacterium colombiense strain E1334 contig_99, whole genome

Gene Summary

Adenine Count

902744 bp

Thymine Count

896987 bp

Guanine Count

1868182 bp

Cytosine Count

1877867 bp

Genome Length

5545780 bp

Protein-coding Genes

4894 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioesteraseA5708_07750Not AvailablePositive4688962 - 468960622573.8
llm class f420-dependent oxidoreductaseA5708_07755Not AvailablePositive4689603 - 469046332060.3
hypothetical proteinA5708_07760Not AvailablePositive4690570 - 469106116216.0
type i glutamate--ammonia ligaseA5708_07765P0A591Negative4692323 - 469375953715.2
hypothetical proteinA5708_07770Not AvailablePositive4694004 - 469442614849.6
hypothetical proteinA5708_07775P9WLI0Negative4694459 - 469521126933.3
lipoyl synthaseA5708_07780A0QEY6Negative4695269 - 469619234613.3
lipoate-protein ligase bA5708_07785Q73YJ7Negative4696189 - 469688724728.5
tigr01777 family proteinA5708_07790P9WGP6Negative4696946 - 469786932493.8
2-oxoglutarate dehydrogenase, e2 component, dihydrolipoamide succinyltransferaseA5708_07795P65634Negative4697886 - 469867127636.0

Displaying genes 4191 – 4200 of 4947 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

489 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 489 metabolites

Health Effects

No health effects information available for this bacterium.