Gilliamella sp. Bif1-4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Orbales

Family

Orbaceae

Genus

Gilliamella

Description

Gilliamella sp. Bif1-4 is characterized by having a single replicon, indicating a simplified genomic structure. This trait can be significant in the context of its genetic stability and adaptability. The organism's genomic information is cataloged under the accession number LZHC00000000.1, which allows for further research and analysis of its genetic makeup. As a member of the Gilliamella genus, this bacterium is expected to play a role in the microbiome, particularly within the digestive systems of various hosts, although specific host associations for Gilliamella sp. Bif1-4 are not provided. Gilliamella species are often associated with mutualistic relationships, where they may contribute to the breakdown of complex carbohydrates, thus aiding in nutrient absorption and overall host health. The presence of a single replicon suggests that Gilliamella sp. Bif1-4 may have a streamlined metabolic capacity, which is advantageous in competitive environments like the gut microbiome. Such a genomic configuration may enable efficient resource utilization, potentially allowing this bacterium to thrive in specific ecological niches. In summary, Gilliamella sp. Bif1-4, with its single replicon and genetic information cataloged under LZHC00000000.1, represents a microbial entity that could have significant ecological implications, particularly in its role within host-associated microbiomes. Its potential contributions to nutrient cycling and host health further highlight the importance of understanding such microorganisms in ecological and biological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOrbales
FamilyOrbaceae
GenusGilliamella
SpeciesGilliamella sp. Bif1-4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gilliamella sp. Bif1-4 Gilliamella_apicola_Bif1-4_contig98, whole

Gene Summary

Adenine Count

822622 bp

Thymine Count

836366 bp

Guanine Count

453091 bp

Cytosine Count

439515 bp

Genome Length

2551594 bp

Protein-coding Genes

2171 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
isoleucine--trna ligaseA9G25_11700B4F2T5Positive2464597 - 2467404105976.0
signal peptidase iiA9G25_11705A6VQH9Positive2467510 - 246798018060.5
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseA9G25_11710A8G9L7Positive2467982 - 246892935063.2
ferredoxinA9G25_11715P52102Negative2468931 - 24691829320.15
transposaseA9G25_11725Not AvailableNegative2470504 - 247079111316.8
transposaseA9G25_11730Not AvailableNegative2471138 - 24712725035.03
Trna-lysNot AvailableNot AvailablePositive2471958 - 2472033Not Available
tol-pal system protein ybgfA9G25_11740P45955Negative2472166 - 247290327488.7
peptidoglycan-associated lipoproteinA9G25_11745P0A913Negative2472971 - 247345017445.6
tol-pal system beta propeller repeat protein tolbA9G25_11750A8GB93Negative2473611 - 247490647186.8

Displaying genes 2211 – 2220 of 2284 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

123 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001358lactateC3H5O3Chemical structure of lactateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 123 metabolites

Health Effects

No health effects information available for this bacterium.