Vibrio splendidus strain UCD-FRSSP16_15

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio splendidus strain UCD-FRSSP16_15 is a marine, gram-negative bacterium known for its pathogenicity in aquatic animals. This strain is particularly associated with the oyster family Ostreidae, with Magallana gigas being a notable host. As a pathogen, it poses a risk to fish health, suggesting that it could have significant implications for aquaculture and marine ecosystems where these species are cultivated or thrive. The bacterium is characterized by having a single replicon, which is indicative of its genomic structure. This trait may contribute to its adaptability in marine environments, allowing it to thrive in specific ecological niches. The strain is cataloged under the accession number LZGA00000000.1, which facilitates its identification and study within scientific databases. The presence of V. splendidus in marine environments highlights the complex interactions between pathogens and their hosts, particularly in the context of bivalve mollusks like oysters. Understanding the pathogenic mechanisms and environmental conditions that favor the proliferation of this bacterium is crucial for managing its impact on aquaculture and maintaining the health of marine biodiversity. This underscores the importance of ongoing research into marine pathogens and their ecological roles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio splendidus
Strainstrain UCD-FRSSP16_15

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio splendidus strain UCD-FRSSP16_15
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Bivalvia, Holothuroidea, Ostreidae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Vibrio splendidus strain UCD-FRSSP16_15 scaffold_9, whole genome

Gene Summary

Adenine Count

1505914 bp

Thymine Count

1497663 bp

Guanine Count

1165096 bp

Cytosine Count

1205147 bp

Genome Length

5373978 bp

Protein-coding Genes

4524 genes

Non-Coding Genes

157 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l19A9262_04325Not AvailableNegative1043455 - 104380813278.2
trna (guanosine(37)-n1)-methyltransferase trmdA9262_04330Not AvailableNegative1043868 - 104460827731.1
ribosome maturation factor rimmA9262_04335Not AvailableNegative1044635 - 104518921347.3
30s ribosomal protein s16A9262_04340Not AvailableNegative1045214 - 10454629121.97
signal recognition particle proteinA9262_04345Not AvailableNegative1045675 - 104706950530.2
chromosome partitioning protein parbA9262_04350Not AvailablePositive1047270 - 104806429164.9
magnesium/cobalt efflux proteinA9262_04355Not AvailablePositive1048192 - 104946347116.8
s-ribosylhomocysteinaseA9262_04360Not AvailableNegative1049668 - 105018618937.7
hypothetical proteinA9262_04365Not AvailableNegative1050211 - 105086124958.4
glutamate--cysteine ligaseA9262_04370Not AvailableNegative1050872 - 105244059005.7

Displaying genes 891 – 900 of 4681 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

80 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da

Displaying 1–10 of 80 metabolites

Health Effects

Health ConditionRelationReference
Fish pathogenCausesPMC12838003
Skin ulceration syndromeCausesPMC9653642
SusCausesPMC9653642

Displaying health effects 1 – 3 of 3 in total