Vibrio sp. UCD-FRSSP16_10

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. UCD-FRSSP16_10 is characterized by having a single replicon, which indicates a streamlined genomic organization typical of many Vibrio species. The accession number for this strain is LZFX00000000.1, which serves as a unique identifier for its genomic sequence in biological databases. While specific phenotypic traits and ecological roles of Vibrio sp. UCD-FRSSP16_10 are not detailed in the provided data, Vibrio species are generally known to inhabit marine environments and are often associated with various ecological interactions, including those with marine organisms and in nutrient cycling. The single replicon trait may suggest an adaptation to specific environmental conditions, allowing for efficient replication and resource utilization. Understanding the genomic characteristics of Vibrio sp. UCD-FRSSP16_10 could provide insights into its ecological niche and potential interactions within marine ecosystems. Further investigation into its metabolic capabilities and ecological roles could enhance our knowledge of its contribution to marine biodiversity and nutrient dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. UCD-FRSSP16_10
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. UCD-FRSSP16_10
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. UCD-FRSSP16_10 scaffold_9, whole genome shotgun

Gene Summary

Adenine Count

1050788 bp

Thymine Count

1035409 bp

Guanine Count

743775 bp

Cytosine Count

763929 bp

Genome Length

3593963 bp

Protein-coding Genes

3067 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
leucyl/phenylalanyl-trna--protein transferaseA9264_01930Not AvailablePositive407982 - 40868626422.6
arginyltransferaseA9264_01935Not AvailablePositive408719 - 40941727371.3
translation initiation factor if-1A9264_01940Not AvailablePositive409487 - 4097058223.14
atp-dependent clp protease atp-binding subunit clpaA9264_01945Not AvailableNegative409880 - 41214783763.1
atp-dependent clp protease adapter clpsA9264_01950Not AvailableNegative412205 - 41252512323.7
cold shock domain protein cspdA9264_01955Not AvailablePositive412970 - 4131917897.27
hypothetical proteinA9264_01960Not AvailablePositive413627 - 41451732921.4
merr family transcriptional regulatorA9264_01965Not AvailablePositive414530 - 41505720654.8
thioredoxinA9264_01970Not AvailableNegative415071 - 41572124520.1
carboxymuconolactone decarboxylaseA9264_01975Not AvailableNegative415804 - 41635220303.2

Displaying genes 391 – 400 of 3183 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.