Variovorax sp. JS1663 JS1663_0140

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. JS1663 is characterized as a rod-shaped bacterium, which is a common morphology among various members of the genus Variovorax. This organism is notable for having a single replicon, indicating a streamlined genetic structure that may facilitate efficient replication and adaptation in its environment. The genomic information for Variovorax sp. JS1663 is accessible under the accession number LYMK00000000.1, providing a resource for further study and exploration of its genetic characteristics. This genomic data can shed light on the organism's metabolic pathways and ecological functions, although specific metabolic capabilities are not detailed in the provided information. In terms of ecological significance, members of the Variovorax genus are often associated with diverse environments and have been recognized for their roles in biodegradation and bioremediation processes. The rod shape of Variovorax sp. JS1663 may confer advantages in nutrient uptake and motility, which are critical for survival in various habitats. As a result, this bacterium could play a role in nutrient cycling and the degradation of organic materials in its ecosystem. The study of Variovorax sp. JS1663 may enhance our understanding of microbial diversity and the ecological roles of bacteria in environmental processes, particularly in contexts where they can contribute to the breakdown of pollutants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. JS1663
StrainJS1663_0140

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. JS1663 JS1663_0140, whole genome shotgun sequence.

Gene Summary

Adenine Count

1167690 bp

Thymine Count

1173867 bp

Guanine Count

2494286 bp

Cytosine Count

2488518 bp

Genome Length

7324361 bp

Protein-coding Genes

6611 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoribosyl-amp cyclohydrolaseA8M77_07500Not AvailableNegative1529050 - 152945115112.9
imidazole glycerol phosphate synthase subunit hisfA8M77_07505Not AvailableNegative1529486 - 153026527084.3
d-hexose-6-phosphate mutarotaseA8M77_07510Not AvailableNegative1530285 - 153112730517.1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseA8M77_07515Not AvailableNegative1531172 - 153191526188.4
imidazole glycerol phosphate synthase, glutamine amidotransferase subunitA8M77_07520Not AvailableNegative1531964 - 153262023924.2
imidazoleglycerol-phosphate dehydrataseA8M77_07525Not AvailableNegative1532617 - 153324622490.9
histidinol-phosphate transaminaseA8M77_07530Not AvailableNegative1533243 - 153433739176.7
hypothetical proteinA8M77_07535Not AvailableNegative1534346 - 153471113339.2
histidinol dehydrogenaseA8M77_07540Not AvailableNegative1534711 - 153603646683.5
atp phosphoribosyltransferaseA8M77_07545Not AvailableNegative1536038 - 153667922856.9

Displaying genes 1501 – 1510 of 6705 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.