Variovorax sp. JS1663 JS1663_0140

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. JS1663 is characterized as a rod-shaped bacterium, which is a common morphology among various members of the genus Variovorax. This organism is notable for having a single replicon, indicating a streamlined genetic structure that may facilitate efficient replication and adaptation in its environment. The genomic information for Variovorax sp. JS1663 is accessible under the accession number LYMK00000000.1, providing a resource for further study and exploration of its genetic characteristics. This genomic data can shed light on the organism's metabolic pathways and ecological functions, although specific metabolic capabilities are not detailed in the provided information. In terms of ecological significance, members of the Variovorax genus are often associated with diverse environments and have been recognized for their roles in biodegradation and bioremediation processes. The rod shape of Variovorax sp. JS1663 may confer advantages in nutrient uptake and motility, which are critical for survival in various habitats. As a result, this bacterium could play a role in nutrient cycling and the degradation of organic materials in its ecosystem. The study of Variovorax sp. JS1663 may enhance our understanding of microbial diversity and the ecological roles of bacteria in environmental processes, particularly in contexts where they can contribute to the breakdown of pollutants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. JS1663
StrainJS1663_0140

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. JS1663 JS1663_0140, whole genome shotgun sequence.

Gene Summary

Adenine Count

1167690 bp

Thymine Count

1173867 bp

Guanine Count

2494286 bp

Cytosine Count

2488518 bp

Genome Length

7324361 bp

Protein-coding Genes

6611 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydroxyacid dehydrogenaseA8M77_06365Not AvailableNegative1279425 - 128038433622.9
abc transporter substrate-binding proteinA8M77_06370Not AvailableNegative1280381 - 128135534344.8
dihydroxy-acid dehydrataseA8M77_06375Not AvailablePositive1281534 - 128327063048.3
2-dehydro-3-deoxygalactonokinaseA8M77_06380Not AvailablePositive1283302 - 128419831740.3
2-dehydro-3-deoxy-6-phosphogalactonate aldolaseA8M77_06385Not AvailablePositive1284290 - 128493121292.2
hypothetical proteinA8M77_06390Not AvailablePositive1284941 - 128570827799.3
short-chain dehydrogenaseA8M77_06395Not AvailableNegative1285785 - 128648623846.4
mate family efflux transporterA8M77_06400Not AvailableNegative1286525 - 128793148575.8
mfs transporterA8M77_06405Not AvailableNegative1287939 - 128919542676.4
marr family transcriptional regulatorA8M77_06410Not AvailableNegative1289188 - 128965217044.5

Displaying genes 1281 – 1290 of 6705 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.