Variovorax sp. JS1663 JS1663_0140

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. JS1663 is characterized as a rod-shaped bacterium, which is a common morphology among various members of the genus Variovorax. This organism is notable for having a single replicon, indicating a streamlined genetic structure that may facilitate efficient replication and adaptation in its environment. The genomic information for Variovorax sp. JS1663 is accessible under the accession number LYMK00000000.1, providing a resource for further study and exploration of its genetic characteristics. This genomic data can shed light on the organism's metabolic pathways and ecological functions, although specific metabolic capabilities are not detailed in the provided information. In terms of ecological significance, members of the Variovorax genus are often associated with diverse environments and have been recognized for their roles in biodegradation and bioremediation processes. The rod shape of Variovorax sp. JS1663 may confer advantages in nutrient uptake and motility, which are critical for survival in various habitats. As a result, this bacterium could play a role in nutrient cycling and the degradation of organic materials in its ecosystem. The study of Variovorax sp. JS1663 may enhance our understanding of microbial diversity and the ecological roles of bacteria in environmental processes, particularly in contexts where they can contribute to the breakdown of pollutants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. JS1663
StrainJS1663_0140

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. JS1663 JS1663_0140, whole genome shotgun sequence.

Gene Summary

Adenine Count

1167690 bp

Thymine Count

1173867 bp

Guanine Count

2494286 bp

Cytosine Count

2488518 bp

Genome Length

7324361 bp

Protein-coding Genes

6611 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate dehydrogenase, cytochrome b556 subunitA8M77_05960Not AvailablePositive1197809 - 119825516552.4
succinate dehydrogenase, hydrophobic membrane anchor proteinA8M77_05965Not AvailablePositive1198269 - 119863413749.2
succinate dehydrogenase flavoprotein subunitA8M77_05970Not AvailablePositive1198722 - 120053066024.6
succinate dehydrogenase iron-sulfur subunitA8M77_05975Not AvailablePositive1200627 - 120132826633.3
hypothetical proteinA8M77_05980Not AvailablePositive1201350 - 120165211439.8
citrate (si)-synthaseA8M77_05985Not AvailablePositive1201677 - 120298748590.8
entericidinA8M77_05990Not AvailablePositive1203108 - 12032484939.09
lysr family transcriptional regulatorA8M77_05995Not AvailablePositive1203373 - 120431734036.2
3-isopropylmalate dehydratase large subunitA8M77_06000Not AvailablePositive1204366 - 120578751027.9
3-isopropylmalate dehydratase small subunitA8M77_06005Not AvailablePositive1205806 - 120645624286.0

Displaying genes 1201 – 1210 of 6705 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.