Planctopirus hydrillae strain JC280

Gram-negativeCocciMotileaerobic

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Planctomycetales

Family

Planctomycetaceae

Genus

Planctopirus

Description

Planctopirus hydrillae strain JC280 is a Gram-negative bacterium characterized by its cocci shape and the presence of flagella. This strain has been assigned the accession number LYDR00000000.1, which indicates its sequence data is available for further research and analysis. One notable trait of Planctopirus hydrillae strain JC280 is its single replicon, which suggests a streamlined genomic organization typical of certain aquatic bacteria. The presence of flagella is significant as it implies motility, allowing the bacterium to navigate through its aquatic environment, potentially aiding in colonization and interaction with other microorganisms. Understanding the characteristics of Planctopirus hydrillae strain JC280 contributes to the broader knowledge of microbial diversity in aquatic ecosystems. Its cocci shape and motility may play a role in nutrient cycling and the dynamics of microbial communities in freshwater habitats, particularly those associated with hydrilla plants. The specific traits of this strain highlight its potential ecological role and adaptability in its niche, marking it as an interesting subject for further microbiological and ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusPlanctopirus
SpeciesPlanctopirus hydrillae
Strainstrain JC280

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Planctopirus hydrillae strain JC280
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementAggregates
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planctopirus hydrillae strain JC280 Contig98, whole genome shotgun

Gene Summary

Adenine Count

1331327 bp

Thymine Count

1326176 bp

Guanine Count

1540834 bp

Cytosine Count

1551906 bp

Genome Length

5750243 bp

Protein-coding Genes

4491 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cysteine desulfuraseA6X21_13260Not AvailablePositive5083254 - 508455847177.4
5-(carboxyamino)imidazole ribonucleotide mutaseA6X21_13265Not AvailablePositive5084807 - 508530417593.6
5-(carboxyamino)imidazole ribonucleotide synthaseA6X21_13270Not AvailablePositive5085301 - 508646441688.9
error-prone dna polymeraseA6X21_13275Not AvailableNegative5086501 - 5089581116083.0
nucleotidyltransferaseA6X21_13280Not AvailableNegative5089584 - 509100554064.9
hypothetical proteinA6X21_13285Not AvailableNegative5091034 - 509179227822.3
hypothetical proteinA6X21_13290Not AvailablePositive5091910 - 509258425379.6
hypothetical proteinA6X21_13295Not AvailablePositive5092810 - 50930318049.7
3' terminal rna ribose 2'-o-methyltransferase hen1A6X21_13300Not AvailablePositive5093140 - 509453752945.2
nucleotidyltransferaseA6X21_13305Not AvailablePositive5094530 - 509548036048.4

Displaying genes 3981 – 3990 of 4491 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.