Planctopirus hydrillae strain JC280

Gram-negativeCocciMotileaerobic

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Planctomycetales

Family

Planctomycetaceae

Genus

Planctopirus

Description

Planctopirus hydrillae strain JC280 is a Gram-negative bacterium characterized by its cocci shape and the presence of flagella. This strain has been assigned the accession number LYDR00000000.1, which indicates its sequence data is available for further research and analysis. One notable trait of Planctopirus hydrillae strain JC280 is its single replicon, which suggests a streamlined genomic organization typical of certain aquatic bacteria. The presence of flagella is significant as it implies motility, allowing the bacterium to navigate through its aquatic environment, potentially aiding in colonization and interaction with other microorganisms. Understanding the characteristics of Planctopirus hydrillae strain JC280 contributes to the broader knowledge of microbial diversity in aquatic ecosystems. Its cocci shape and motility may play a role in nutrient cycling and the dynamics of microbial communities in freshwater habitats, particularly those associated with hydrilla plants. The specific traits of this strain highlight its potential ecological role and adaptability in its niche, marking it as an interesting subject for further microbiological and ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusPlanctopirus
SpeciesPlanctopirus hydrillae
Strainstrain JC280

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Planctopirus hydrillae strain JC280
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementAggregates
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planctopirus hydrillae strain JC280 Contig98, whole genome shotgun

Gene Summary

Adenine Count

1331327 bp

Thymine Count

1326176 bp

Guanine Count

1540834 bp

Cytosine Count

1551906 bp

Genome Length

5750243 bp

Protein-coding Genes

4491 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s14A6X21_00655Not AvailablePositive3243705 - 32438906942.65
30s ribosomal protein s8A6X21_00660Not AvailablePositive3243927 - 324432214486.7
50s ribosomal protein l6A6X21_00665Not AvailablePositive3244422 - 324495819056.3
50s ribosomal protein l18A6X21_00670Not AvailablePositive3245033 - 324539513026.7
30s ribosomal protein s5A6X21_00675Not AvailablePositive3245484 - 324596317010.9
50s ribosomal protein l15A6X21_00680Not AvailablePositive3245966 - 324641515851.3
preprotein translocase subunit secyA6X21_00685Not AvailablePositive3246573 - 324794349806.3
30s ribosomal protein s13A6X21_00690Not AvailablePositive3248383 - 324876914877.1
30s ribosomal protein s11A6X21_00695Not AvailablePositive3248869 - 324924913630.5
dna-directed rna polymerase subunit alphaA6X21_00700Not AvailablePositive3249377 - 325038737533.2

Displaying genes 2551 – 2560 of 4491 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.