Veronia pacifica strain CAIM 1920

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Veronia

Description

Veronia pacifica strain CAIM 1920 is characterized by having a single replicon, indicating a streamlined genetic structure. This trait can contribute to its adaptability and efficiency in various environments, potentially influencing its ecological role. The strain is cataloged under the accession number LYBM00000000.1, which allows for its identification and retrieval in genomic databases, facilitating further research and studies on its properties. The simplicity of having one replicon may suggest that Veronia pacifica strain CAIM 1920 is specialized and may possess unique metabolic capabilities or ecological interactions that enable it to thrive in its native habitat. Such characteristics are often observed in microorganisms that have adapted to specific ecological niches, potentially allowing them to outcompete other species in similar environments. Given the importance of genetic structure in microbial ecology, the single replicon of Veronia pacifica strain CAIM 1920 could be a significant factor in its survival strategies and ecological interactions. This aspect may warrant further investigation to understand its role in nutrient cycling or its interactions with other microorganisms in its ecosystem. Overall, the genetic traits of Veronia pacifica strain CAIM 1920 highlight its potential importance in ecological studies and its role in microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVeronia
SpeciesVeronia pacifica
Strainstrain CAIM 1920

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Veronia pacifica strain CAIM 1920 contig163, whole genome shotgun

Gene Summary

Adenine Count

1432626 bp

Thymine Count

1450104 bp

Guanine Count

1218263 bp

Cytosine Count

1187140 bp

Genome Length

5288133 bp

Protein-coding Genes

4377 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arac family transcriptional regulatorA8L45_02335Not AvailablePositive520128 - 52101533906.5
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphataseA8L45_02340Not AvailableNegative521074 - 52170623198.4
imidazole glycerol phosphate synthase subunit hisfA8L45_02345Not AvailableNegative521703 - 52247628618.2
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseA8L45_02350Not AvailableNegative522458 - 52319526583.6
imidazole glycerol phosphate synthase, glutamine amidotransferase subunitA8L45_02355Not AvailableNegative523204 - 52380321860.1
bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphataseA8L45_02360Not AvailableNegative523806 - 52487339509.2
histidinol-phosphate transaminaseA8L45_02365Not AvailableNegative524905 - 52595138577.4
histidinol dehydrogenaseA8L45_02370Not AvailableNegative525951 - 52726446913.1
atp phosphoribosyltransferaseA8L45_02375Not AvailableNegative527271 - 52816733005.4
hypothetical proteinA8L45_02380Not AvailableNegative528607 - 5288077400.55

Displaying genes 451 – 460 of 4377 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.