Rhodobacteraceae bacterium EhC02

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Description

Rhodobacteraceae bacterium EhC02 is a member of the family Rhodobacteraceae, which are known for their diverse metabolic capabilities and roles in various ecological niches. This bacterium has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation to its environment. The genomic data for Rhodobacteraceae bacterium EhC02 is accessible through the accession number LXYH00000000.1, which allows researchers to explore its genetic makeup and potential functions further. This strain may be involved in important biological processes, such as photosynthesis or nitrogen fixation, common among members of the Rhodobacteraceae family, although specific metabolic pathways for EhC02 are not detailed in the available traits. The ecological significance of Rhodobacteraceae bacterium EhC02 could be substantial, given the general characteristics of its family. Rhodobacteraceae members often inhabit aquatic environments, contributing to nutrient cycling and supporting the microbial food web. Their ability to perform photosynthesis suggests a role in primary production within these ecosystems, potentially influencing carbon dynamics and providing energy for other organisms. In summary, Rhodobacteraceae bacterium EhC02, with its single replicon and accessible genomic data, exemplifies the ecological importance of Rhodobacteraceae in nutrient cycling and primary production, though further research is required to elucidate its specific roles and contributions within its habitat.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodobacteraceae bacterium EhC02


Gene Summary

Adenine Count

747293 bp

Thymine Count

746434 bp

Guanine Count

1294505 bp

Cytosine Count

1300822 bp

Genome Length

4089081 bp

Protein-coding Genes

3803 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferredoxin reductaseA8B83_10260P76081Negative874146 - 87519537277.4
phenylacetate-coa oxygenase subunit paajA8B83_10265P76080Negative875215 - 87571217705.1
phenylacetate-coa oxygenase subunit paaiA8B83_10270P76079Negative875706 - 87645227923.1
1,2-phenylacetyl-coa epoxidase subunit bA8B83_10275P76078Negative876452 - 87673610465.2
1,2-phenylacetyl-coa epoxidase subunit aA8B83_10280P76077Negative876810 - 87779337319.4
nad(p)-dependent oxidoreductaseA8B83_10285Not AvailablePositive877910 - 87876731082.3
hypothetical proteinA8B83_10290Not AvailablePositive878791 - 87939621654.2
1-deoxy-d-xylulose-5-phosphate synthaseA8B83_10295Q5LX42Negative879406 - 88133168078.7
farnesyl-diphosphate synthaseA8B83_10300P22939Negative881360 - 88219629722.5
exodeoxyribonuclease vii small subunitA8B83_10305Q5LX40Negative882227 - 8824698762.45

Displaying genes 851 – 860 of 3862 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

324 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 324 metabolites

Health Effects

No health effects information available for this bacterium.