Sphingomonas sp. TDK1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. TDK1 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its motility. This organism has a single replicon, indicating a streamlined genomic structure that could be advantageous for its adaptability and efficiency in various environments. The accession number for Sphingomonas sp. TDK1 is LXVY00000000.1, which provides a reference point for further genomic studies and characterization. The presence of flagella suggests that Sphingomonas sp. TDK1 may possess the ability to navigate its surroundings effectively, potentially allowing it to colonize diverse ecological niches. This motility could enhance its survival and competitiveness in environments where nutrient availability or other resources fluctuate. Furthermore, being a member of the Sphingomonadaceae family, this bacterium may play a role in biogeochemical processes, particularly in the degradation of complex organic compounds. Sphingomonas species are known for their metabolic versatility, which often includes the ability to degrade various xenobiotic compounds. As such, Sphingomonas sp. TDK1 may contribute to ecological functions such as bioremediation, where microorganisms break down pollutants, thereby facilitating nutrient cycling in ecosystems. In summary, the morphological and genetic traits of Sphingomonas sp. TDK1 highlight its potential ecological significance, particularly in the context of environmental adaptation and bioremediation processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. TDK1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. TDK1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. TDK1 TDK1_contig_9, whole genome shotgun

Gene Summary

Adenine Count

917387 bp

Thymine Count

909579 bp

Guanine Count

1783146 bp

Cytosine Count

1801038 bp

Genome Length

5414866 bp

Protein-coding Genes

4819 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histone deacetylaseA7X12_02575Not AvailableNegative3881843 - 388278433212.3
rna pyrophosphohydrolaseA7X12_02580Not AvailablePositive3882863 - 388334218337.9
hypothetical proteinA7X12_02585Not AvailableNegative3883349 - 388400822929.1
acetyl/propionyl-coa carboxylase subuit alphaA7X12_02590Not AvailableNegative3884177 - 388618972782.0
hypothetical proteinA7X12_02595Not AvailableNegative3886189 - 38863837548.6
biotin synthase biobA7X12_02600Not AvailableNegative3886385 - 388739536091.3
hypothetical proteinA7X12_02605Not AvailableNegative3887392 - 388833634002.2
methylmalonyl-coa mutaseA7X12_02610Not AvailableNegative3888333 - 389047176874.0
methylmalonyl-coa epimeraseA7X12_02615Not AvailableNegative3890559 - 389097815075.3
methylmalonyl-coa carboxyltransferaseA7X12_02620Not AvailableNegative3891002 - 389252855420.6

Displaying genes 3471 – 3480 of 4819 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0006317hydrogenobyrinate a,c-diamideC45H62N6O12Chemical structure of hydrogenobyrinate a,c-diamideNot available
Average879.021Da
Monoisotopic878.4425715Da

Displaying 1–5 of 5 metabolites

Health Effects

No health effects information available for this bacterium.