Sphingomonas sp. TDK1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. TDK1 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its motility. This organism has a single replicon, indicating a streamlined genomic structure that could be advantageous for its adaptability and efficiency in various environments. The accession number for Sphingomonas sp. TDK1 is LXVY00000000.1, which provides a reference point for further genomic studies and characterization. The presence of flagella suggests that Sphingomonas sp. TDK1 may possess the ability to navigate its surroundings effectively, potentially allowing it to colonize diverse ecological niches. This motility could enhance its survival and competitiveness in environments where nutrient availability or other resources fluctuate. Furthermore, being a member of the Sphingomonadaceae family, this bacterium may play a role in biogeochemical processes, particularly in the degradation of complex organic compounds. Sphingomonas species are known for their metabolic versatility, which often includes the ability to degrade various xenobiotic compounds. As such, Sphingomonas sp. TDK1 may contribute to ecological functions such as bioremediation, where microorganisms break down pollutants, thereby facilitating nutrient cycling in ecosystems. In summary, the morphological and genetic traits of Sphingomonas sp. TDK1 highlight its potential ecological significance, particularly in the context of environmental adaptation and bioremediation processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. TDK1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. TDK1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. TDK1 TDK1_contig_9, whole genome shotgun

Gene Summary

Adenine Count

917387 bp

Thymine Count

909579 bp

Guanine Count

1783146 bp

Cytosine Count

1801038 bp

Genome Length

5414866 bp

Protein-coding Genes

4819 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crp/fnr family transcriptional regulatorA7X12_00560Not AvailablePositive136540 - 13725927099.8
peptidylprolyl isomeraseA7X12_00565Not AvailableNegative137266 - 13787721827.6
aspartyl/glutamyl-trna amidotransferase subunit bA7X12_00570Not AvailableNegative137891 - 13940254955.3
glycosyl transferaseA7X12_00575Not AvailablePositive139656 - 14061535003.7
hypothetical proteinA7X12_00580Not AvailablePositive140766 - 14223552556.4
hypothetical proteinA7X12_00585Not AvailablePositive142366 - 14366747029.7
aspartyl/glutamyl-trna amidotransferase subunit aA7X12_00590Not AvailableNegative143798 - 14527951782.4
asparaginyl/glutamyl-trna amidotransferase subunit cA7X12_00595Not AvailableNegative145276 - 14556310252.3
hypothetical proteinA7X12_00600Not AvailablePositive145711 - 14682339701.5
amino acid dehydrogenaseA7X12_00605Not AvailableNegative146830 - 14789136072.2

Displaying genes 111 – 120 of 4819 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0006317hydrogenobyrinate a,c-diamideC45H62N6O12Chemical structure of hydrogenobyrinate a,c-diamideNot available
Average879.021Da
Monoisotopic878.4425715Da

Displaying 1–5 of 5 metabolites

Health Effects

No health effects information available for this bacterium.