Sphingobium sp. TCM1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. TCM1 is a bacterial species characterized by the presence of flagella, which facilitates motility. This trait is significant as it may enhance the organism’s ability to navigate its environment, potentially aiding in nutrient acquisition or colonization of specific niches. The species has a single replicon, indicating a streamlined genetic structure that could contribute to efficient replication and cellular processes. The genomic data for Sphingobium sp. TCM1 is accessible under the accession number LXVX00000000.1, providing a reference point for researchers interested in its genetic characteristics and potential applications in biotechnology or environmental science. In ecological contexts, the motility provided by flagella may allow Sphingobium sp. TCM1 to thrive in various environments, including those rich in organic compounds, where it may play a role in bioremediation or the degradation of pollutants. Understanding the traits of this organism can be crucial for exploring its potential applications in environmental microbiology, particularly in the breakdown of complex organic pollutants, which aligns with the broader capabilities often attributed to the Sphingobium genus.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. TCM1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. TCM1 TCM1_contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

919009 bp

Thymine Count

920317 bp

Guanine Count

1654504 bp

Cytosine Count

1660416 bp

Genome Length

5154797 bp

Protein-coding Genes

2320 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphatidate cytidylyltransferaseA7Q26_04315Not AvailablePositive988689 - 98946826706.5
1-deoxy-d-xylulose-5-phosphate reductoisomeraseA7Q26_04320Not AvailablePositive989465 - 99062240147.4
rip metalloprotease rsepA7Q26_04325Not AvailablePositive990619 - 99175240186.5
outer membrane protein assembly factor bamaA7Q26_04330Not AvailablePositive991840 - 99448898232.8
hypothetical proteinA7Q26_04335Not AvailablePositive994488 - 99514422572.1
3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabzA7Q26_04340Not AvailablePositive995151 - 99562717052.0
50s ribosomal protein l31A7Q26_04345Not AvailablePositive995815 - 9960398216.68
3-dehydroquinate synthaseA7Q26_04350Not AvailableNegative996301 - 99740739001.8
shikimate kinaseA7Q26_04355Not AvailableNegative997398 - 99794620187.6
hypothetical proteinA7Q26_04360Not AvailablePositive998044 - 9982327010.66

Displaying genes 891 – 900 of 2320 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.