Sphingobium sp. TCM1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. TCM1 is a bacterial species characterized by the presence of flagella, which facilitates motility. This trait is significant as it may enhance the organism’s ability to navigate its environment, potentially aiding in nutrient acquisition or colonization of specific niches. The species has a single replicon, indicating a streamlined genetic structure that could contribute to efficient replication and cellular processes. The genomic data for Sphingobium sp. TCM1 is accessible under the accession number LXVX00000000.1, providing a reference point for researchers interested in its genetic characteristics and potential applications in biotechnology or environmental science. In ecological contexts, the motility provided by flagella may allow Sphingobium sp. TCM1 to thrive in various environments, including those rich in organic compounds, where it may play a role in bioremediation or the degradation of pollutants. Understanding the traits of this organism can be crucial for exploring its potential applications in environmental microbiology, particularly in the breakdown of complex organic pollutants, which aligns with the broader capabilities often attributed to the Sphingobium genus.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. TCM1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. TCM1 TCM1_contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

919009 bp

Thymine Count

920317 bp

Guanine Count

1654504 bp

Cytosine Count

1660416 bp

Genome Length

5154797 bp

Protein-coding Genes

2320 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adenylosuccinate synthaseA7Q26_10130Not AvailableNegative2206963 - 220825246193.1
atp phosphoribosyltransferase regulatory subunitA7Q26_10135Not AvailableNegative2208388 - 220952440192.0
phosphoglycerate dehydrogenaseA7Q26_10140Not AvailableNegative2209622 - 221120255780.5
phosphoserine aminotransferaseA7Q26_10145Not AvailableNegative2211330 - 221249041351.2
extensinA7Q26_10150Not AvailablePositive2212652 - 221333223902.8
lysine decarboxylaseA7Q26_10155Not AvailablePositive2213402 - 221428933290.9
pyrimidine 5'-nucleotidaseA7Q26_10160Not AvailablePositive2214462 - 221512724702.3
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseA7Q26_10165Not AvailablePositive2215131 - 221597029582.5
glycosyl transferaseA7Q26_10170Not AvailablePositive2216200 - 221742945517.9
glycosyl transferase family 1A7Q26_10175Not AvailablePositive2217422 - 221856441342.4

Displaying genes 2041 – 2050 of 2320 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.