Sphingobium sp. TCM1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. TCM1 is a bacterial species characterized by the presence of flagella, which facilitates motility. This trait is significant as it may enhance the organism’s ability to navigate its environment, potentially aiding in nutrient acquisition or colonization of specific niches. The species has a single replicon, indicating a streamlined genetic structure that could contribute to efficient replication and cellular processes. The genomic data for Sphingobium sp. TCM1 is accessible under the accession number LXVX00000000.1, providing a reference point for researchers interested in its genetic characteristics and potential applications in biotechnology or environmental science. In ecological contexts, the motility provided by flagella may allow Sphingobium sp. TCM1 to thrive in various environments, including those rich in organic compounds, where it may play a role in bioremediation or the degradation of pollutants. Understanding the traits of this organism can be crucial for exploring its potential applications in environmental microbiology, particularly in the breakdown of complex organic pollutants, which aligns with the broader capabilities often attributed to the Sphingobium genus.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. TCM1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. TCM1 TCM1_contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

919009 bp

Thymine Count

920317 bp

Guanine Count

1654504 bp

Cytosine Count

1660416 bp

Genome Length

5154797 bp

Protein-coding Genes

2320 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidylprolyl isomeraseA7Q26_09275Not AvailableNegative2038729 - 203933721602.1
chromosomal replication initiation protein dnaaA7Q26_09280Not AvailableNegative2039380 - 204078051128.6
30s ribosomal protein s20A7Q26_09285Not AvailableNegative2041187 - 20414509329.46
dna-formamidopyrimidine glycosylaseA7Q26_09290Not AvailableNegative2041567 - 204239430090.6
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylaseA7Q26_09295Not AvailablePositive2042477 - 204320827338.7
2-polyprenylphenol 6-hydroxylaseA7Q26_09300Not AvailablePositive2043216 - 204475756725.9
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthaseA7Q26_09305Not AvailablePositive2044754 - 204602844546.8
deoxyuridine 5'-triphosphate nucleotidohydrolaseA7Q26_09310Not AvailablePositive2046003 - 204645815669.9
hypothetical proteinA7Q26_09315Not AvailablePositive2046463 - 204694517370.1
molybdopterin biosynthesis protein moebA7Q26_09320Not AvailablePositive2046942 - 204770926526.3

Displaying genes 1871 – 1880 of 2320 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.