Agrobacterium tumefaciens strain 15-174

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain 15-174 is a Gram-negative, rod-shaped bacterium that requires oxygen for growth, classifying it as an aerobe. This strain is mesophilic, with an optimal growth temperature of 25°C, and it possesses mobility facilitated by flagella. It has a unique cellular structure characterized by two membranes and one replicon. A. tumefaciens strain 15-174 exhibits a free-living biotic relationship and is known to infect a variety of plant hosts, including species within the Viridiplantae kingdom such as Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), and Oryza sativa (rice). This strain also interacts with other plant species like Arabidopsis, Serendipita indica, Glycine max (soybean), Lathyrus oleraceus (pea), Ficus benjamina (fig), Zingiber officinale (ginger), Oxalis corniculata, and Cannabis. One of the significant health effects associated with this bacterium is its role in the development of tumors in plants, particularly manifested as crown gall disease. This condition leads to the formation of crown gall tumors, which can severely impact plant health and productivity. The ecological insight from A. tumefaciens strain 15-174 lies in its ability to transfer genetic material to plant cells, leading to tumor formation. This process illustrates the complex interactions between this bacterium and its plant hosts, highlighting its potential impact on agricultural practices and plant health management. Understanding these dynamics is essential for developing strategies to mitigate the effects of crown gall disease in affected crops.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain 15-174

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain 15-174
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain 15-174 AS1I5_9, whole genome

Gene Summary

Adenine Count

1248104 bp

Thymine Count

1277733 bp

Guanine Count

1783922 bp

Cytosine Count

1744943 bp

Genome Length

6054965 bp

Protein-coding Genes

5419 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
potassium transporter trkaA6U97_06905Not AvailablePositive1360742 - 136257166105.2
patatinA6U97_06910Not AvailableNegative1362614 - 136351031999.1
16s rrna (guanine(966)-n(2))-methyltransferase rsmdA6U97_06915Not AvailableNegative1363730 - 136428720168.1
pseudouridine synthaseA6U97_06920Not AvailableNegative1364268 - 136624471444.5
pp_01361A6U97_06925Not AvailablePositive1366316 - 1366774Not Available
hypothetical proteinA6U97_06930Not AvailableNegative1366827 - 136748024008.1
isoleucine--trna ligaseA6U97_06935Not AvailableNegative1367686 - 1370589108246.0
riboflavin biosynthesis protein ribfA6U97_06940Not AvailableNegative1370858 - 137183835687.4
had family hydrolaseA6U97_06945Not AvailableNegative1371882 - 137273030065.2
co-chaperone groesA6U97_06950Not AvailablePositive1373100 - 137339610546.8

Displaying genes 1421 – 1430 of 5598 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total