Pseudomonas sp. 21C1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. 21C1 is characterized by having a single replicon, which indicates a streamlined genomic structure that can contribute to its adaptability and efficiency in various environments. The genomic sequence of this strain is accessible under the accession number LXJR00000000.1. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches, which may include soil, water, and plant surfaces. This versatility often enables them to play significant roles in biogeochemical cycles and in the degradation of pollutants, suggesting an ecological importance in maintaining environmental health and sustainability. The presence of a single replicon in Pseudomonas sp. 21C1 may suggest a level of genomic simplicity that can facilitate rapid growth and adaptation to changing environmental conditions. This adaptability is a hallmark of many Pseudomonas species, which are often employed in bioremediation efforts due to their capacity to degrade various organic compounds. In summary, Pseudomonas sp. 21C1, with its single replicon and genomic accessibility, exemplifies the ecological and biological significance of Pseudomonas species in environmental contexts. Its traits highlight the potential for contributing to ecological balance and bioremediation processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. 21C1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. 21C1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. 21C1 contig00110, whole genome shotgun sequence.

Gene Summary

Adenine Count

1041498 bp

Thymine Count

989555 bp

Guanine Count

1611330 bp

Cytosine Count

1699839 bp

Genome Length

5342222 bp

Protein-coding Genes

4603 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glucose dehydrogenaseA7D25_19260Not AvailableNegative4289703 - 429080039777.5
hypothetical proteinA7D25_19265Not AvailableNegative4290835 - 429128715421.7
alginate lyaseA7D25_19270Not AvailablePositive4291670 - 429234124325.9
amino acid abc transporter substrate-binding proteinA7D25_19275Not AvailableNegative4292360 - 429311227960.7
amino acid abc transporter substrate-binding proteinA7D25_19280Not AvailableNegative4293477 - 429422927951.8
amino acid abc transporter substrate-binding proteinA7D25_19285Not AvailableNegative4294404 - 429515927781.5
imidazole glycerol phosphate synthase subunit hisfA7D25_19290Not AvailableNegative4295303 - 429607327184.7
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseA7D25_19295Not AvailableNegative4296174 - 429691125854.2
1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomeraseA7D25_19300Not AvailableNegative4296950 - 429721010130.2
imidazole glycerol phosphate synthase, glutamine amidotransferase subunitA7D25_19305Not AvailableNegative4297211 - 429784923510.2

Displaying genes 3871 – 3880 of 4709 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.