Pseudomonas sp. 21C1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. 21C1 is characterized by having a single replicon, which indicates a streamlined genomic structure that can contribute to its adaptability and efficiency in various environments. The genomic sequence of this strain is accessible under the accession number LXJR00000000.1. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches, which may include soil, water, and plant surfaces. This versatility often enables them to play significant roles in biogeochemical cycles and in the degradation of pollutants, suggesting an ecological importance in maintaining environmental health and sustainability. The presence of a single replicon in Pseudomonas sp. 21C1 may suggest a level of genomic simplicity that can facilitate rapid growth and adaptation to changing environmental conditions. This adaptability is a hallmark of many Pseudomonas species, which are often employed in bioremediation efforts due to their capacity to degrade various organic compounds. In summary, Pseudomonas sp. 21C1, with its single replicon and genomic accessibility, exemplifies the ecological and biological significance of Pseudomonas species in environmental contexts. Its traits highlight the potential for contributing to ecological balance and bioremediation processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. 21C1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. 21C1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. 21C1 contig00110, whole genome shotgun sequence.

Gene Summary

Adenine Count

1041498 bp

Thymine Count

989555 bp

Guanine Count

1611330 bp

Cytosine Count

1699839 bp

Genome Length

5342222 bp

Protein-coding Genes

4603 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
heme oxygenaseA7D25_11935Not AvailablePositive2595634 - 259622721808.8
type vi secretion proteinA7D25_11940Not AvailableNegative2596489 - 259756840335.9
type vi secretion system protein implA7D25_11945Not AvailableNegative2597565 - 2601392142021.0
type vi secretion system protein impkA7D25_11950Not AvailableNegative2601389 - 260215928765.6
type vi secretion system-associated proteinA7D25_11955Not AvailableNegative2602189 - 260351447648.7
type vi secretion proteinA7D25_11960Not AvailableNegative2603576 - 260404617893.5
type vi secretion system-associated proteinA7D25_11965Not AvailablePositive2604255 - 260481820838.5
evpb family type vi secretion proteinA7D25_11970Not AvailablePositive2604848 - 260632654762.1
type vi secretion effector protein (hcp)A7D25_11975Not AvailablePositive2606394 - 260689117688.1
type vi secretion proteinA7D25_11980Not AvailablePositive2606901 - 260734116766.0

Displaying genes 2431 – 2440 of 4709 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.