Pseudomonas sp. 1D4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. 1D4 is characterized by having a single replicon, which is essential for its genomic organization and cellular function. The genome of this strain is available under the accession number LXJQ00000000.1, indicating its documented genetic sequence in public databases. As a member of the Pseudomonas genus, Pseudomonas sp. 1D4 may exhibit traits typical of this group, including metabolic versatility and the ability to thrive in various environments. Pseudomonas species are known for their capacity to degrade a wide range of organic compounds, which can contribute to bioremediation processes in contaminated environments. The presence of a single replicon suggests that Pseudomonas sp. 1D4 may have streamlined its genetic architecture, potentially enhancing its adaptability to specific ecological niches. This adaptability is crucial for survival in fluctuating environments, allowing the bacterium to respond effectively to changes in nutrient availability and stress conditions. Overall, the traits of Pseudomonas sp. 1D4 underscore its potential ecological role, particularly in nutrient cycling and environmental cleanup, reflecting the broader capabilities of the Pseudomonas genus in diverse ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. 1D4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. 1D4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. 1D4 contig00139, whole genome shotgun sequence.

Gene Summary

Adenine Count

1003855 bp

Thymine Count

967416 bp

Guanine Count

1903315 bp

Cytosine Count

1974545 bp

Genome Length

5849131 bp

Protein-coding Genes

5205 genes

Non-Coding Genes

2 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-methyladenine dna glycosylaseA7D27_19985Not AvailablePositive4352699 - 435325020966.3
lipid a biosynthesis lauroyl acyltransferaseA7D27_19990Not AvailablePositive4353318 - 435420532545.0
pilus assembly protein pilzA7D27_19995Not AvailablePositive4354301 - 43545679844.91
hypothetical proteinA7D27_20000Not AvailableNegative4354598 - 435502615570.5
hypothetical proteinA7D27_20005Not AvailableNegative4355028 - 435534811429.7
potassium transporterA7D27_20010Not AvailableNegative4355416 - 435682551354.2
trk system potassium transport protein trkaA7D27_20015Not AvailableNegative4357060 - 435843350009.2
16s rrna (cytosine(967)-c(5))-methyltransferaseA7D27_20020Not AvailableNegative4358445 - 435975847305.9
methionyl-trna formyltransferaseA7D27_20025Not AvailableNegative4359755 - 436069933424.5
peptide deformylaseA7D27_20030Not AvailableNegative4360760 - 436126619290.3

Displaying genes 3911 – 3920 of 5207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.