Pseudomonas sp. 1D4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. 1D4 is characterized by having a single replicon, which is essential for its genomic organization and cellular function. The genome of this strain is available under the accession number LXJQ00000000.1, indicating its documented genetic sequence in public databases. As a member of the Pseudomonas genus, Pseudomonas sp. 1D4 may exhibit traits typical of this group, including metabolic versatility and the ability to thrive in various environments. Pseudomonas species are known for their capacity to degrade a wide range of organic compounds, which can contribute to bioremediation processes in contaminated environments. The presence of a single replicon suggests that Pseudomonas sp. 1D4 may have streamlined its genetic architecture, potentially enhancing its adaptability to specific ecological niches. This adaptability is crucial for survival in fluctuating environments, allowing the bacterium to respond effectively to changes in nutrient availability and stress conditions. Overall, the traits of Pseudomonas sp. 1D4 underscore its potential ecological role, particularly in nutrient cycling and environmental cleanup, reflecting the broader capabilities of the Pseudomonas genus in diverse ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. 1D4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. 1D4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. 1D4 contig00139, whole genome shotgun sequence.

Gene Summary

Adenine Count

1003855 bp

Thymine Count

967416 bp

Guanine Count

1903315 bp

Cytosine Count

1974545 bp

Genome Length

5849131 bp

Protein-coding Genes

5205 genes

Non-Coding Genes

2 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lps export abc transporter permease lptgA7D27_14310Not AvailablePositive3091292 - 309235338660.5
hypothetical proteinA7D27_14315Not AvailableNegative3092403 - 309290019045.4
cold-shock proteinA7D27_14320Not AvailableNegative3093006 - 30932187793.27
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaA7D27_14330Not AvailablePositive3093738 - 309478738207.7
trna guanosine(34) transglycosylase tgtA7D27_14335Not AvailablePositive3094784 - 309592042141.2
preprotein translocase subunit yajcA7D27_14340Not AvailablePositive3095974 - 309631211874.6
protein-export membrane protein secdA7D27_14345Not AvailablePositive3096373 - 309823567807.6
protein-export membrane protein secfA7D27_14350Not AvailablePositive3098243 - 309915732885.5
hypothetical proteinA7D27_14355Not AvailablePositive3099331 - 309990019778.5
inositol monophosphataseA7D27_14360Not AvailableNegative3099961 - 310077629500.2

Displaying genes 2811 – 2820 of 5207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.