Pseudomonas sp. 1D4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. 1D4 is characterized by having a single replicon, which is essential for its genomic organization and cellular function. The genome of this strain is available under the accession number LXJQ00000000.1, indicating its documented genetic sequence in public databases. As a member of the Pseudomonas genus, Pseudomonas sp. 1D4 may exhibit traits typical of this group, including metabolic versatility and the ability to thrive in various environments. Pseudomonas species are known for their capacity to degrade a wide range of organic compounds, which can contribute to bioremediation processes in contaminated environments. The presence of a single replicon suggests that Pseudomonas sp. 1D4 may have streamlined its genetic architecture, potentially enhancing its adaptability to specific ecological niches. This adaptability is crucial for survival in fluctuating environments, allowing the bacterium to respond effectively to changes in nutrient availability and stress conditions. Overall, the traits of Pseudomonas sp. 1D4 underscore its potential ecological role, particularly in nutrient cycling and environmental cleanup, reflecting the broader capabilities of the Pseudomonas genus in diverse ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. 1D4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. 1D4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. 1D4 contig00139, whole genome shotgun sequence.

Gene Summary

Adenine Count

1003855 bp

Thymine Count

967416 bp

Guanine Count

1903315 bp

Cytosine Count

1974545 bp

Genome Length

5849131 bp

Protein-coding Genes

5205 genes

Non-Coding Genes

2 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
murein transglycosylaseA7D27_08265Not AvailablePositive1792762 - 179408447170.9
lipoyl synthaseA7D27_08270Not AvailablePositive1794209 - 179526138564.0
octanoyltransferaseA7D27_08275Not AvailableNegative1795329 - 179588920328.7
hypothetical proteinA7D27_08280Not AvailableNegative1795952 - 179623010183.3
d-alanyl-d-alanine carboxypeptidaseA7D27_08285Not AvailableNegative1796319 - 179748242496.2
hypothetical proteinA7D27_08290Not AvailableNegative1797579 - 179858936283.3
lytic murein transglycosylase bA7D27_08295Not AvailableNegative1798593 - 179960336716.7
rod shape-determining protein rodaA7D27_08300Not AvailableNegative1799618 - 180076341650.5
penicillin-binding protein 2A7D27_08305Not AvailableNegative1800760 - 180266170737.8
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhA7D27_08310Not AvailableNegative1802671 - 180313817631.4

Displaying genes 1681 – 1690 of 5207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.